PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_191_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ERF
Protein Properties Length: 198aa    MW: 21458.8 Da    PI: 7.3726
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_191_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.6e-193785153
           AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkl 53
                  ++y+GVr ++ +gr++AeIrd ++    ++r++lg+f++ae+Aa+a+++a+   
  Neem_191_f_1 37 PRYRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAARAYDKAAHFQ 85
                  68********.**********883....5*********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512577133No hitNo description
CDDcd000188.01E-263782No hitNo description
PfamPF008471.4E-123786IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.5E-253883IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-173884IPR016177DNA-binding domain
SMARTSM003801.4E-223899IPR001471AP2/ERF domain
PROSITE profilePS5103219.5853882IPR001471AP2/ERF domain
PRINTSPR003677.1E-113950IPR001471AP2/ERF domain
PRINTSPR003677.1E-116177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MRRARGAATA AATKQLVEPN VAAAAAIGGG SACAKEPRYR GVRKRPWGRF AAEIRDPWKK  60
TRVWLGTFDS AEDAARAYDK AAHFQDQHIV NPQRPTTSSM SSTVESFSGP RPHPLPQKSA  120
NLTASGSRRY PRTPPVVPED CHSDCDSSSS VVDDDGGDIA LSSSCNRKQL LPFDLNYPPL  180
DEVDFNGDDD LQCTALCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1828104481Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001295747.11e-62ethylene-responsive transcription factor 3-like
SwissprotO803399e-43ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLA0A068BGH53e-61A0A068BGH5_JATCU; C-repeat binding transcription factor 2
STRINGXP_006475008.15e-58(Citrus sinensis)
STRINGXP_006452450.15e-58(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.12e-25ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]