PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_19062_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ERF
Protein Properties Length: 269aa    MW: 29483.1 Da    PI: 4.386
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_19062_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.94.4e-1225601755
             AP2 17 AeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    AeIrdp++   + r++lg+f+taeeAa a+++a+++++g
  Neem_19062_f_1 25 AEIRDPTT---KERHWLGTFDTAEEAALAYDRAARSMRG 60
                    9****965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.999168IPR001471AP2/ERF domain
SMARTSM003803.0E-172374IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-142469IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.9E-212568IPR001471AP2/ERF domain
CDDcd000182.35E-212567No hitNo description
PfamPF008478.8E-63360IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MIHRLKSWTH SQIISMCKIA IARSAEIRDP TTKERHWLGT FDTAEEAALA YDRAARSMRG  60
SKARTNFVYS DMPAGSSVTS IISPDESQHD ISSLFAAAAP HSQAHDANNI NQLFFNQEPF  120
NLSQFSISDV TFSDGWAQGN ETYGSYKPIT CVMDAADHSQ TYTADCELPP LPPDVSSSSC  180
YYSPGMTNSD AGFGAWNDQT GFLSFPGETT DGGRLDHSSF NGDFLGFESS EFLQQQQNSQ  240
IFGRMPSVSD SVTDGFDFSS SSSSSTYFF
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007043742.12e-91PREDICTED: ethylene-responsive transcription factor LEP
SwissprotQ9FZ905e-37ERF87_ARATH; Ethylene-responsive transcription factor ERF087
TrEMBLA0A061EB965e-90A0A061EB96_THECC; AP2/ERF domain-containing transcription factor, putative
STRINGEOX995739e-91(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.12e-24ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]