PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Neem_1891_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
|
||||||||
Family | NF-X1 | ||||||||
Protein Properties | Length: 1106aa MW: 120123 Da PI: 8.1883 | ||||||||
Description | NF-X1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-NF-X1 | 18 | 6.5e-06 | 419 | 436 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H+C+++CH+GpC++C Neem_1891_f_2 419 CGHHSCGEICHPGPCGEC 436 ****************** PP | |||||||
2 | zf-NF-X1 | 18.5 | 4.2e-06 | 477 | 494 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG H C++ CH G+CppC Neem_1891_f_2 477 CGLHHCNEFCHAGDCPPC 494 ****************** PP | |||||||
3 | zf-NF-X1 | 20.3 | 1.2e-06 | 572 | 590 | 1 | 19 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+C++lCH G CppC Neem_1891_f_2 572 CGQHTCESLCHSGHCPPCL 590 ******************6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57850 | 3.18E-7 | 178 | 247 | No hit | No description |
PROSITE profile | PS50016 | 8.769 | 185 | 246 | IPR019787 | Zinc finger, PHD-finger |
PROSITE pattern | PS01359 | 0 | 188 | 243 | IPR019786 | Zinc finger, PHD-type, conserved site |
PROSITE profile | PS50089 | 9.45 | 188 | 244 | IPR001841 | Zinc finger, RING-type |
CDD | cd06008 | 3.99E-5 | 277 | 338 | No hit | No description |
SMART | SM00438 | 0.016 | 300 | 318 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.61 | 302 | 317 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 5.23E-11 | 345 | 393 | No hit | No description |
Pfam | PF01422 | 0.013 | 346 | 372 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.0067 | 355 | 374 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 8.66E-10 | 409 | 452 | No hit | No description |
Pfam | PF01422 | 0.068 | 419 | 436 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.008 | 419 | 438 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 3.02E-14 | 467 | 515 | No hit | No description |
Pfam | PF01422 | 1.6E-4 | 477 | 494 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 4.3E-4 | 477 | 496 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.69E-4 | 524 | 583 | No hit | No description |
Pfam | PF01422 | 18 | 534 | 545 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.43E-9 | 562 | 614 | No hit | No description |
Pfam | PF01422 | 1.8E-5 | 572 | 589 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 1.3E-4 | 572 | 591 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.43E-5 | 619 | 667 | No hit | No description |
Pfam | PF01422 | 2.6 | 629 | 646 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.026 | 629 | 647 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.069 | 682 | 701 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 1.2 | 682 | 702 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.17E-5 | 710 | 759 | No hit | No description |
Pfam | PF01422 | 1.9 | 714 | 740 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.0092 | 721 | 742 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01424 | 2.6E-4 | 853 | 918 | IPR001374 | R3H domain |
Gene3D | G3DSA:3.30.70.330 | 4.5E-4 | 960 | 1009 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009642 | Biological Process | response to light intensity | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009697 | Biological Process | salicylic acid biosynthetic process | ||||
GO:0010188 | Biological Process | response to microbial phytotoxin | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1106 aa Download sequence Send to blast |
MSSEVRNDRR DRNRFPGRST RREWVPRGFS AAVVNVPQSF NQNADAAQSF NQNADAAQSF 60 NQNADAAQSF NQNAVAAQSF NQNAVAAQSF NQNTNAPQSF NQNANGDSEN TRDVSVSHDN 120 RRRGNQDFRG QKGQFANNEF RGQKGQFTNH HRGRGRGENQ AKKEPKDPNL PQLVQEIQDK 180 LMKGTVECMI CYDMVRRSAP IWSCSSCYSI FHLNCIKKWA RAPTSVDLSA EKNQGFNWRC 240 PGCQYVQLTS SKEIRYVCFC GKRTDPPSDL YLTPHSCGEP CGKPLESKVS SAGGSDEDLC 300 PHTCVLQCHP GPCPPCKAFA PPCLCPCGKK MITTRCSDRK SVLTCGQKCD KHLECLRHKC 360 EQICHVGPCG PCQVLVNASC FCKKKVEVVL CGDMAVKGEV KAEDGVFSCS STCGKKLRCG 420 HHSCGEICHP GPCGECELMP SKIKSCFCGK TSLQDQRKSC LDPIPTCSKV CGKPLACGLH 480 HCNEFCHAGD CPPCLVQVTQ KCRCGSTSRT VECYRTTGNE NFTCEKACGR KKNCGRHRCS 540 ERCCPFSSSN NLHSGDWDPH FCQMACGKKL RCGQHTCESL CHSGHCPPCL ETIFTDLTCA 600 CGRTSIPPPL PCGTPTPSCQ LPCSIPQPCG HSASHSCHFG DCPPCSVPIA KECIGGHVVL 660 RNIPCGSKDI RCNKLCGKTR QCGMHACGRT CHPPPCDAAC SSEPGLKASC GQICGAPRRD 720 CRHTCTALCH PSGLCPDVRC EFPVTITCSC GRSTASVPCD AGGSSAGFNS DTVFEASIVQ 780 KLPVPLQPVE LTGKKIPLGQ RKLMCDDECA KLERKRVLAD AFDITPPNLD SLHFGENAAV 840 SELLADLYRR DPKWVLSVEE RCKFLVLGKN RGNANSLKVH VFCPMLKDKR DAVRIIAERW 900 KLAVSAAGWE PKRFVVVHVT SKSKAPPRVI GVKGASAVNA SHPPVFDPLV DMDPRLVVSF 960 LDLPREADIS ALVLRFGGEC ELVWLNDKNA LAVFSDPARA ATATRRLDHG SVYYGAVLVV 1020 QNSGASGAPS SGNAWGGQGM VKEVGGVASQ RGNPWKKAVV QEMSWREDSW GDEEPSGGSA 1080 DLQASAWKEK RTSYCSNNKS VECPGP |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Mediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006440984.1 | 0.0 | NF-X1-type zinc finger protein NFXL1 | ||||
Swissprot | Q9SY59 | 0.0 | NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1 | ||||
TrEMBL | V4VN00 | 0.0 | V4VN00_9ROSI; Uncharacterized protein | ||||
STRING | XP_006440984.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5955 | 26 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G10170.1 | 0.0 | NF-X-like 1 |