PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_18885_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ERF
Protein Properties Length: 343aa    MW: 37450.7 Da    PI: 8.427
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_18885_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-20188237255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  Neem_18885_f_1 188 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 237
                     7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.3E-33188246IPR001471AP2/ERF domain
SMARTSM003803.0E-37188251IPR001471AP2/ERF domain
PfamPF008472.7E-14188237IPR001471AP2/ERF domain
PROSITE profilePS5103225.712188245IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-23188246IPR016177DNA-binding domain
PRINTSPR003678.1E-12189200IPR001471AP2/ERF domain
CDDcd000181.16E-15196247No hitNo description
PRINTSPR003678.1E-12211227IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MCTLKVANQR GSDECRSFPA RGGGGGGGGD GDDGQDESYS QEMLESQTLS HFQDLNSQSS  60
ASASSMLMAY SQTREMSAMV SALTRVVSGR RAADLGYGAT GLGGAYTVNT VLSRLVKISI  120
AWLESNKFRF LSLPVFIICL PSLTVTEEPT SNITAPPTTA TTTTITVPTT PSTGSSVSYE  180
ETGERRRRYR GVRQRPWGKW AAEIRDPHKA ARVWLGTFDT AEAAARAYDE AALRFRGNRA  240
KLNFPENVRL VPSPLQQPQA LQNFPVRQTA NLPGSSSTSY QQQPQTTSAN PAAMPPFFMS  300
QGYQDYWDYS QLLQNQPSSL LEQMFHQSST QMASMQSSFD GKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-23187248163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183188ERRRRY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A4D6BYF23e-82A0A4D6BYF2_9ROSI; Ethylene-responsive transcription factor ABR1-like protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.14e-17ERF family protein