PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_18705_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

NAC

Protein Properties

Length: 361aa MW: 41579.8 Da PI: 8.1665

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_18705_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.7	9.1e-53	17	144	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhP+deel+ +yLk+kv++++l++ ++i+++d+yk++PwdLpkk+ +e+ewyfF++rd+ky++g r+nra++sg+Wkatg+dk++l++ Neem_18705_f_2 17 LPPGFRFHPSDEELIIHYLKNKVTSNPLPA-SIIADIDLYKYNPWDLPKKALFGEEEWYFFTPRDRKYPNGARPNRAAASGFWKATGTDKPILTS 110 79**************************.89***********8888899**********************************99 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +g+kk Lvfykgr pkg ktdW+mheyrl Neem_18705_f_2 111 cGTKSIGVKKALVFYKGRPPKGYKTDWIMHEYRL 144 78889*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.02E-63	13	171	IPR003441	NAC domain
PROSITE profile	PS51005	60.593	17	171	IPR003441	NAC domain
Pfam	PF02365	3.2E-27	18	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MLPSSMEKDK ASSNIQLPPG FRFHPSDEEL IIHYLKNKVT SNPLPASIIA DIDLYKYNPW 60 DLPKKALFGE EEWYFFTPRD RKYPNGARPN RAAASGFWKA TGTDKPILTS CGTKSIGVKK 120 ALVFYKGRPP KGYKTDWIMH EYRLVDTIVW TPKRKGSMRL DDWVLCRVRQ KVSNSRNTWE 180 DRNDSSYEAS GIVSKANELW PMNRNPNIEM VKSYLYNDCP MLPYIFASQD FLSGMDTDRS 240 SISFQDSDKS CTAVYEGNSN QKENFQFSVS SFESLCNPLK RKLMEGNNQR DNRVPPSKKI 300 KEGNVQQKEE NILSVISYDG TVEMKIYETD RSEGNNFSED HQWSSIMQYQ ELNHLALTGT 360 D

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MLPSSMEKDK ASSNIQLPPG FRFHPSDEEL IIHYLKNKVT SNPLPASIIA DIDLYKYNPW  60
DLPKKALFGE EEWYFFTPRD RKYPNGARPN RAAASGFWKA TGTDKPILTS CGTKSIGVKK  120
ALVFYKGRPP KGYKTDWIMH EYRLVDTIVW TPKRKGSMRL DDWVLCRVRQ KVSNSRNTWE  180
DRNDSSYEAS GIVSKANELW PMNRNPNIEM VKSYLYNDCP MLPYIFASQD FLSGMDTDRS  240
SISFQDSDKS CTAVYEGNSN QKENFQFSVS SFESLCNPLK RKLMEGNNQR DNRVPPSKKI  300
KEGNVQQKEE NILSVISYDG TVEMKIYETD RSEGNNFSED HQWSSIMQYQ ELNHLALTGT  360
D

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-69	7	180	6	173	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1. {ECO:0000269\|PubMed:17124321, ECO:0000269\|PubMed:22278768}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007027296.2	1e-172	PREDICTED: NAC domain-containing protein 2 isoform X1
Swissprot	A0SPJ6	5e-81	NAMB2_TRITD; NAC transcription factor NAM-B2
TrEMBL	A0A061ET24	1e-169	A0A061ET24_THECC; NAC domain protein, IPR003441, putative
STRING	EOY07798	1e-170	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17560	8	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	5e-84	NAC domain containing protein 25

Publications ? help Back to Top
Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321]