PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_18656_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family Dof
Protein Properties Length: 271aa    MW: 29651.8 Da    PI: 5.4302
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_18656_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1261.1e-39104163261
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                     ++k+l+cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ 
  Neem_18656_f_1 104 PDKILACPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKQF 163
                     68999****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-3091161IPR003851Zinc finger, Dof-type
PfamPF027012.5E-32106162IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.658108162IPR003851Zinc finger, Dof-type
PROSITE patternPS013610110146IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MNGGDMSEPN KDPAIKLFGA KIPVPDTQIP AQPQNTDGGK VSIKEEAEDS HSDHTEEPTK  60
SSSLNDVKEE DQTPVQANEV QANAKANIEQ SDSSTDQEKV FKRPDKILAC PRCNSMDTKF  120
CYFNNYNVNQ PRHFCKNCQR YWTAGGTMRN VPVGAGRRKN KQFASQYRQI IVSSDGLPVT  180
GLETPNSANH QLIPCGDSAT TYRPSTGNGT VLKFGPEAPL CESMETVLNL GDQKRSVEMG  240
SVNCVENREE PSSSGSSMPT SRASYDGRIL Q
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. The stability of CDF2 is controlled by 'GIGANTEA' and redundantly by ADO3, ADO2 and/or ADO1. {ECO:0000250, ECO:0000269|PubMed:19619493}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. Regulated at the protein level by ADO3 and GI pos-transcriptionally. {ECO:0000269|PubMed:19619493}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006443525.11e-144cyclic dof factor 3
RefseqXP_006479196.11e-144cyclic dof factor 3-like
SwissprotQ93ZL57e-50CDF2_ARATH; Cyclic dof factor 2
TrEMBLA0A2H5NIN31e-143A0A2H5NIN3_CITUN; Uncharacterized protein
STRINGXP_006479196.11e-143(Citrus sinensis)
STRINGXP_006443525.11e-143(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM155911017
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.24e-52cycling DOF factor 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]