PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_18290_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | SRS | ||||||||
Protein Properties | Length: 228aa MW: 25439.5 Da PI: 8.6311 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 180.4 | 7.5e-56 | 13 | 146 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskk 98 g+a+CqdCGnqakk+C+++RCRtCCk rgf+C+th+kstW+pa++rr+r ++++ + ++ ++ + +++kr re+ +s++ Neem_18290_f_1 13 GGARCQDCGNQAKKNCVYMRCRTCCKRRGFECQTHIKSTWIPAYRRRQRYNHQQLLPAQ-GQQLQGHNPKRLREN----------------TSST 90 7889*********************************************8888776443.344444445555443................2233 PP DUF702 99 eletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++ ++P+e+s+ea frcvrvss++d+++++aYqtav+igGhvfkGiLydqG+e+ Neem_18290_f_1 91 GSQIGNFPAEMSTEATFRCVRVSSIEDADDNFAYQTAVTIGGHVFKGILYDQGPES 146 455788***********************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 9.0E-58 | 14 | 145 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 8.5E-27 | 17 | 58 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 1.5E-25 | 97 | 144 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MMLNMRQLGA ELGGARCQDC GNQAKKNCVY MRCRTCCKRR GFECQTHIKS TWIPAYRRRQ 60 RYNHQQLLPA QGQQLQGHNP KRLRENTSST GSQIGNFPAE MSTEATFRCV RVSSIEDADD 120 NFAYQTAVTI GGHVFKGILY DQGPESCYNV GESSSSEPPL PQPQPQPQQQ QPYYPFSVAN 180 LNTATTTTAT ATISNTSAAN ETLFPPPYTF PFTSFMSGGM QFFPHPKS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022725081.1 | 2e-85 | protein SHI RELATED SEQUENCE 1-like | ||||
Swissprot | Q9SD40 | 3e-57 | SRS1_ARATH; Protein SHI RELATED SEQUENCE 1 | ||||
TrEMBL | A0A2H5PKM1 | 5e-82 | A0A2H5PKM1_CITUN; Uncharacterized protein | ||||
STRING | POPTR_0009s12450.1 | 2e-80 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9188 | 26 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51060.1 | 2e-51 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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