PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_1822_f_3

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 441aa MW: 48196 Da PI: 6.8611

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_1822_f_3	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.7	6.3e-06	348	386	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Neem_1822_f_3 348 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 386 5778999********998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.576	337	386	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-10	347	394	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.67E-7	347	391	No hit	No description
SMART	SM00353	0.0014	348	392	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.2E-10	351	396	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MADESNTTTN WWESSRNRFD SGSSSSSSAL NNSLGSFGWP TEMVDIKAAR SSIDSSASVS 60 GSSVVFQDSQ KLQQGPDSAG SDLHMMGLGL SSPSLDWYQA LVPGDKSGRS FRSMLQDSNA 120 NYQQETGMGS SQVQWPREKV FPGISGDSTV TEFKQMSRGF SLDQPQFSPH GSSTDSTVKC 180 QGLPSSFQMD STALYGNPST IFQGILGSEN QPHQSAASFE NRSVNYHYGA STYGMNTSEV 240 LPSWSGNKVP QFSRTSSPKQ QPQHTHLHFS NNAPFWNASA ASMNDVRASG FFPTLQTPYQ 300 TQAFDEKPKQ IISEVRESST AVKKSCGSEP ASKRARNETP SPLPAFKVRK EKMGDRITAL 360 QQLVSPFGKT DTASVLSEAI EYIKFLHEQV HNNSDKSKDN EGPKQDLRSR GLCLVPVSST 420 FPVTHETTVD FWTPTFGGTF R

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MADESNTTTN WWESSRNRFD SGSSSSSSAL NNSLGSFGWP TEMVDIKAAR SSIDSSASVS  60
GSSVVFQDSQ KLQQGPDSAG SDLHMMGLGL SSPSLDWYQA LVPGDKSGRS FRSMLQDSNA  120
NYQQETGMGS SQVQWPREKV FPGISGDSTV TEFKQMSRGF SLDQPQFSPH GSSTDSTVKC  180
QGLPSSFQMD STALYGNPST IFQGILGSEN QPHQSAASFE NRSVNYHYGA STYGMNTSEV  240
LPSWSGNKVP QFSRTSSPKQ QPQHTHLHFS NNAPFWNASA ASMNDVRASG FFPTLQTPYQ  300
TQAFDEKPKQ IISEVRESST AVKKSCGSEP ASKRARNETP SPLPAFKVRK EKMGDRITAL  360
QQLVSPFGKT DTASVLSEAI EYIKFLHEQV HNNSDKSKDN EGPKQDLRSR GLCLVPVSST  420
FPVTHETTVD FWTPTFGGTF R

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017979565.1	0.0	PREDICTED: transcription factor bHLH123 isoform X3
Refseq	XP_021287910.1	0.0	transcription factor bHLH123 isoform X2
Swissprot	Q8GXT3	2e-75	BH123_ARATH; Transcription factor bHLH123
TrEMBL	A0A061F6M7	0.0	A0A061F6M7_THECC; Basic helix-loop-helix DNA-binding superfamily protein
STRING	EOY12661	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4024	25	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	1e-74	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]