PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Neem_18137_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 194aa MW: 22197.9 Da PI: 8.6221 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.9 | 4.2e-19 | 20 | 71 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++t++q++ Le+ F +n+++++e +++LA++lg+ rqV vW+qN+Ra++k Neem_18137_f_1 20 KRLTQDQVRLLERSFTSNKKLDTELKQKLANQLGVAPRQVAVWYQNKRARWK 71 569************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 105.1 | 5.5e-34 | 19 | 109 | 3 | 93 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 k+rl+++qv+lLE+sF++++kL++e K++la++Lg+ prqvavW+qn+RAR+kt+ lE dy+a++ ++++ +e++rLek+v++Lreel++ Neem_18137_f_1 19 KKRLTQDQVRLLERSFTSNKKLDTELKQKLANQLGVAPRQVAVWYQNKRARWKTQSLELDYNAIQVKLENALAEKRRLEKDVKQLREELRR 109 99*************************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.791 | 13 | 73 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.3E-15 | 15 | 77 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.55E-16 | 18 | 81 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.46E-13 | 19 | 74 | No hit | No description |
Pfam | PF00046 | 2.1E-16 | 20 | 71 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-18 | 21 | 80 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 48 | 71 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009646 | Biological Process | response to absence of light | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 194 aa Download sequence Send to blast |
MDIFNSLQDQ KHPQKFHGKK RLTQDQVRLL ERSFTSNKKL DTELKQKLAN QLGVAPRQVA 60 VWYQNKRARW KTQSLELDYN AIQVKLENAL AEKRRLEKDV KQLREELRRA QQMLFALSNQ 120 KAVETNISTT VVSCNNYSTA TSCSDQKGHC SSFSSLLQED YVHGGDHDHH DDQALQIDHE 180 LYACLIGAGG SAWG |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006451774.1 | 2e-89 | homeobox-leucine zipper protein ATHB-52 | ||||
Refseq | XP_006464812.1 | 2e-89 | homeobox-leucine zipper protein ATHB-52 | ||||
TrEMBL | A0A2H5PUT7 | 5e-88 | A0A2H5PUT7_CITUN; Uncharacterized protein | ||||
TrEMBL | V4WEM7 | 5e-88 | V4WEM7_9ROSI; Uncharacterized protein | ||||
STRING | XP_006464812.1 | 9e-89 | (Citrus sinensis) | ||||
STRING | XP_006451774.1 | 9e-89 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12107 | 26 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G53980.1 | 4e-35 | homeobox protein 52 |