PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_17933_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | ARF | ||||||||
Protein Properties | Length: 693aa MW: 75897.4 Da PI: 6.5549 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75 | 8.6e-24 | 126 | 227 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ +++ + t+ +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF + + Neem_17933_f_1 126 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TILAKDVHGEVWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFL--RAE 216 89****************************986445444..8999*********************************************..448 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+v+++r+ Neem_17933_f_1 217 NGDLCVGIRRA 227 8999****997 PP | |||||||
2 | Auxin_resp | 115.8 | 3.9e-38 | 288 | 371 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++FevvY+Prast+eFvvk++ v++a++++++ GmRfkmafetedss++++ +Gt+++v+ +dp+ WpnS+Wr+L+ Neem_17933_f_1 288 AATFAANGQPFEVVYYPRASTPEFVVKASAVRSAMQIQWCSGMRFKMAFETEDSSRISWfMGTISAVQVADPICWPNSPWRLLQ 371 678899****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.4E-37 | 120 | 232 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.97E-29 | 122 | 226 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.05E-22 | 125 | 226 | No hit | No description |
PROSITE profile | PS50863 | 13.239 | 126 | 228 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.0E-23 | 126 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.4E-22 | 126 | 227 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.9E-33 | 288 | 371 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 20.171 | 607 | 687 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 693 aa Download sequence Send to blast |
MIAVMDSAKD SMKKHPTAES CLDSQLWHAC AGSMVQMPPI NSKVFYFPQG HLEHAKGNIE 60 LSNFNIPAMI PCRVTAIKYM ADTETDEVYA KIRLIALNNN GFDDFDDVGF DGNGGSNECS 120 EKPASFAKTL TQSDANNGGG FSVPRYCAET IFPRLDYSAE PPVQTILAKD VHGEVWKFRH 180 IYRGTPRRHL LTTGWSNFVN QKKLVAGDSI VFLRAENGDL CVGIRRAKKG GIGGGSDYSI 240 GWNSGGGNCG FPFGGYSAYM REDENKLPRR HSNTDLRGRV RAESVVEAAT FAANGQPFEV 300 VYYPRASTPE FVVKASAVRS AMQIQWCSGM RFKMAFETED SSRISWFMGT ISAVQVADPI 360 CWPNSPWRLL QVAWDEPDLL QNVKRVSPWL VELVSNIPAI HLSPFSPPRK KLRLPEHPDF 420 SLINPLPMPS FSRNPLMNSS PLRCISDNIP AGIQGARHAQ YGLSSSDLHF NKLQSGLFPL 480 GSQQLENIAR PARIPSSNFL SETGNSDSIS CLLTMGNPTQ SYKDNSEVKT PHILLFGQLI 540 LPQQNSSQSC SGDTIGNSLS DGNPEKTTIS SDGSGSAVHQ NGLLENSSDG GSPWCKDHQK 600 SDLGLETGHC KVFMESEDVG RTLDLSVLGS YEELYGKLAN MFGIGSSEMF SNVLYRDAAG 660 SVKHTGDEPF SEFLKTARRL TILTDSGSDN VGR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 5e-80 | 17 | 392 | 46 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00461 | DAP | Transfer from AT4G30080 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006436433.1 | 0.0 | auxin response factor 16 | ||||
Refseq | XP_006485698.1 | 0.0 | auxin response factor 16 | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A2H5P2B1 | 0.0 | A0A2H5P2B1_CITUN; Auxin response factor | ||||
TrEMBL | V4SPI5 | 0.0 | V4SPI5_9ROSI; Auxin response factor | ||||
STRING | XP_006485698.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006436433.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM580 | 27 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Publications ? help Back to Top | |||
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