PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_17669_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 177aa    MW: 19944.3 Da    PI: 6.2291
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_17669_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.19.7e-191368146
                     TSSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...........tWktIartmgkgRtlkqcksrwqk 46
                     rg W++eEde+l+++++ +G g           +W+ Ia++++ gRt++++k++w++
   Neem_17669_f_1 13 RGLWSPEEDEKLIKYITTHGHGswssvpklagnRWAQIAKHLP-GRTDNEVKNFWNS 68
                     788****************************************.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.9E-14542IPR009057Homeodomain-like
PROSITE profilePS5129421.279874IPR017930Myb domain
SMARTSM007172.3E-171272IPR001005SANT/Myb domain
PfamPF002491.6E-91346IPR001005SANT/Myb domain
SuperFamilySSF466893.37E-151380IPR009057Homeodomain-like
CDDcd001672.47E-141667No hitNo description
Gene3DG3DSA:1.10.10.604.1E-134475IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MGHNCCSKQK VKRGLWSPEE DEKLIKYITT HGHGSWSSVP KLAGNRWAQI AKHLPGRTDN  60
EVKNFWNSCV KKKLIAQGID PNTHNLLAST QIISSNNYGN NNAYENNGIF NSGSFDEVLI  120
EASPEKEEAM LQPKQQQGVL NHDGQNMNQF DFDFLESTVL PCGMYCNLSP IDQFAWD
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023900539.11e-51transcription factor MYB26-like isoform X2
SwissprotQ8LPH62e-36MYB86_ARATH; Transcription factor MYB86
TrEMBLA0A2H5P9K73e-48A0A2H5P9K7_CITUN; Uncharacterized protein
TrEMBLA0A2I4FQP93e-48A0A2I4FQP9_JUGRE; transcription repressor MYB4-like
TrEMBLV4W6S33e-48V4W6S3_9ROSI; Uncharacterized protein
STRINGXP_006448584.15e-49(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79552539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.15e-47myb domain protein 67