PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_17366_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

Dof

Protein Properties

Length: 385aa MW: 42203.4 Da PI: 7.1841

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_17366_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.4	3.3e-38	83	143	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprCds ntkfCyynny+lsqPryfCk+CrryWtkGG lrnvPvGgg+rk k++s Neem_17366_f_1 83 NHQALKCPRCDSLNTKFCYYNNYNLSQPRYFCKSCRRYWTKGGVLRNVPVGGGCRKTKRNS 143 57899****************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	6.3E-33	85	141	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-27	85	141	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.441	87	141	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	89	125	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MPWFVNPDAV SLQFPFRPTL ITAQSLSSSG QFAKFIIIRA CFTAIPSTYI FHLYGMQDIH 60 SIGGGRLYGG GGDRRLRPHP HQNHQALKCP RCDSLNTKFC YYNNYNLSQP RYFCKSCRRY 120 WTKGGVLRNV PVGGGCRKTK RNSKAKASAD SSSAQTQTTA QRERKTNSHS SSESSSTLTV 180 TNNTNVEAVS VHSSSSVSNV LSTMNDNSTK FFGHANGNSN NNEPAPGFEP ATNALLEQGS 240 SDCGIFSEIG SFTSLITSSS EALPFGFSNL LNAQQSLEHV QHSHEQWQQQ QEQQKMVSVS 300 SMGGGGGDEE LKIQDMTSGF LDQTVQIELS ALQDRSNNGG FGSLDWHASG DQGLFDLPNA 360 VDHASYWSQS TTQWTDQDHP SLYLP

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MPWFVNPDAV SLQFPFRPTL ITAQSLSSSG QFAKFIIIRA CFTAIPSTYI FHLYGMQDIH  60
SIGGGRLYGG GGDRRLRPHP HQNHQALKCP RCDSLNTKFC YYNNYNLSQP RYFCKSCRRY  120
WTKGGVLRNV PVGGGCRKTK RNSKAKASAD SSSAQTQTTA QRERKTNSHS SSESSSTLTV  180
TNNTNVEAVS VHSSSSVSNV LSTMNDNSTK FFGHANGNSN NNEPAPGFEP ATNALLEQGS  240
SDCGIFSEIG SFTSLITSSS EALPFGFSNL LNAQQSLEHV QHSHEQWQQQ QEQQKMVSVS  300
SMGGGGGDEE LKIQDMTSGF LDQTVQIELS ALQDRSNNGG FGSLDWHASG DQGLFDLPNA  360
VDHASYWSQS TTQWTDQDHP SLYLP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	63	71	GGRLYGGGG

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00570	DAP	Transfer from AT5G60850	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024956323.1	1e-125	dof zinc finger protein DOF5.4
TrEMBL	A0A067FHN4	1e-122	A0A067FHN4_CITSI; Uncharacterized protein
TrEMBL	A0A2H5Q4Y9	1e-122	A0A2H5Q4Y9_CITUN; Uncharacterized protein
STRING	XP_006485709.1	1e-125	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4482	26	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	3e-35	OBF binding protein 4