PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_17153_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

Dof

Protein Properties

Length: 577aa MW: 63124.3 Da PI: 6.9122

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_17153_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.9	1.2e-39	188	248	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s Neem_17153_f_1 188 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSA 248 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-30	185	245	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.8E-32	190	246	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.975	192	246	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	194	230	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 577 aa Download sequence Send to blast
MAEPKDHGIK LFGRTIPLPE VTLPAATAAG GGGVSVDDGI DQEQTCSTNS SPEDDKSRNE 60 EESESEKWSI IRASNVLSYC QIMFEFSLSK FDVIFALPLI PSEISFLLLP FHFVRKKDMS 120 EDKPAENKQE DGAPARNSEE TSNPDSASGI SECPKTSSDE KESSTVKTKT EEENSEPSTS 180 QEKTLKKPDK ILPCPRCNSM DTKFCYYNNY NVNQPRHFCK NCQRYWTAGG TMRNVPVGAG 240 RRKNKNSASQ YRHITVSEAL QSARTDVPNG VHHPSASQYR HITVSEALQS ARTDVPNGVH 300 HPALKTNGTV LTFGSDAPLC ESMASVLNIA DKTMRNCPRN GFHKPEELKI QLTYRGGEKG 360 DNQSNGSSVT ASNPKAEAGK TASQEPTMQN CQGFPPQVPC FPGNPWPYAW NSAQWSPSVP 420 PPAFCTPGFP MPFYPAAAYW SCSVPGTWSI PWIAQPPSPK TPTSGPNSPT LGKHSRDENV 480 VKPSNSGEEE SQKGNNAERC LWIPKTLRID DPGDAAKSSI WTTLGIKNDK PDSIRRGGLF 540 KAFQPKCDEK NHVAETSPVL QANPAALSRS LNFQESS

Sequence ? help Back to Top

Protein Sequence Length: 577 aa Download sequence Send to blast

MAEPKDHGIK LFGRTIPLPE VTLPAATAAG GGGVSVDDGI DQEQTCSTNS SPEDDKSRNE  60
EESESEKWSI IRASNVLSYC QIMFEFSLSK FDVIFALPLI PSEISFLLLP FHFVRKKDMS  120
EDKPAENKQE DGAPARNSEE TSNPDSASGI SECPKTSSDE KESSTVKTKT EEENSEPSTS  180
QEKTLKKPDK ILPCPRCNSM DTKFCYYNNY NVNQPRHFCK NCQRYWTAGG TMRNVPVGAG  240
RRKNKNSASQ YRHITVSEAL QSARTDVPNG VHHPSASQYR HITVSEALQS ARTDVPNGVH  300
HPALKTNGTV LTFGSDAPLC ESMASVLNIA DKTMRNCPRN GFHKPEELKI QLTYRGGEKG  360
DNQSNGSSVT ASNPKAEAGK TASQEPTMQN CQGFPPQVPC FPGNPWPYAW NSAQWSPSVP  420
PPAFCTPGFP MPFYPAAAYW SCSVPGTWSI PWIAQPPSPK TPTSGPNSPT LGKHSRDENV  480
VKPSNSGEEE SQKGNNAERC LWIPKTLRID DPGDAAKSSI WTTLGIKNDK PDSIRRGGLF  540
KAFQPKCDEK NHVAETSPVL QANPAALSRS LNFQESS

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX630081	1e-103	JX630081.1 Citrus reshni ascorbate oxidase gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006431167.1	0.0	cyclic dof factor 2
TrEMBL	A0A067FZ17	0.0	A0A067FZ17_CITSI; Uncharacterized protein
STRING	XP_006431167.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5441	28	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-109	cycling DOF factor 2