PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_17097_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

NAC

Protein Properties

Length: 265aa MW: 30982.9 Da PI: 7.2557

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_17097_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	125.9	3.2e-39	49	176	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek..ewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 ppG+rF+Ptdeel++ yLk+k+ + +l+ + +ke++iy++ P ++ k++++e +yfF++rd+ky++g+r+nr+t +g+Wka+gk ++v+ Neem_17097_f_1 49 PPGYRFRPTDEELLNLYLKRKLLNLPLPP-NKFKELNIYNYSPMEIFDKYNKQEPegIMYFFTPRDRKYPNGTRPNRVTGAGFWKASGKAEDVIG 142 9***********************999.77**********7555554443345******************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +g k++Lv++ g+++k+ kt+W+mhey++ Neem_17097_f_1 143 EGKFRIGHKRSLVYHLGNSKKSIKTNWLMHEYTV 176 9999**************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-46	44	195	IPR003441	NAC domain
PROSITE profile	PS51005	43.345	48	198	IPR003441	NAC domain
Pfam	PF02365	2.0E-23	49	175	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MDQRKKKKIT EEKDDNIMSE EFASPLFARE DLLEVEDEGE EKLDLDSFPP GYRFRPTDEE 60 LLNLYLKRKL LNLPLPPNKF KELNIYNYSP MEIFDKYNKQ EPEGIMYFFT PRDRKYPNGT 120 RPNRVTGAGF WKASGKAEDV IGEGKFRIGH KRSLVYHLGN SKKSIKTNWL MHEYTVNDSA 180 SSTSTRDPHA VMKMVYHHNG LNNFNFSMPP RIPSGRYQVT PSISNPPYQQ NHRMDYLDWG 240 GFTLLNQQEL EPLDFGGTES RMDRI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-36	47	196	16	163	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-36	47	196	16	163	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-36	47	196	16	163	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-36	47	196	16	163	NO APICAL MERISTEM PROTEIN
3swm_A	2e-36	47	196	19	166	NAC domain-containing protein 19
3swm_B	2e-36	47	196	19	166	NAC domain-containing protein 19
3swm_C	2e-36	47	196	19	166	NAC domain-containing protein 19
3swm_D	2e-36	47	196	19	166	NAC domain-containing protein 19
3swp_A	2e-36	47	196	19	166	NAC domain-containing protein 19
3swp_B	2e-36	47	196	19	166	NAC domain-containing protein 19
3swp_C	2e-36	47	196	19	166	NAC domain-containing protein 19
3swp_D	2e-36	47	196	19	166	NAC domain-containing protein 19
4dul_A	2e-36	47	196	16	163	NAC domain-containing protein 19
4dul_B	2e-36	47	196	16	163	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015389322.1	1e-45	NAC transcription factor 32-like
TrEMBL	A0A2H5QXH1	2e-44	A0A2H5QXH1_CITUN; Uncharacterized protein
STRING	XP_006489948.1	2e-42	(Citrus sinensis)
STRING	XP_006421412.1	1e-42	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17442	7	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	1e-29	NAC family protein