PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_1707_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | Dof | ||||||||
Protein Properties | Length: 316aa MW: 34577.3 Da PI: 8.8346 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.1 | 2.3e-39 | 18 | 78 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ Neem_1707_f_2 18 QQQPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 78 6899******************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-29 | 17 | 76 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.2E-33 | 20 | 76 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.525 | 22 | 76 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 24 | 60 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MASTSRLMEK PGQEAPQQQQ PLKCPRCDSS NTKFCYYNNY SLSQPRHFCK ACKRYWTRGG 60 TLRNVPVGGG CRKNKRVKRP ASSIDGSSST PSANPNPPTQ PQIDISSTSN HINPLFYGLS 120 RNPSDFNLPF SRFNSRVSSV DTVSGYDLQP QLNALGLGFS TGILSNDAGD SNYRNGFNPN 180 KQIQDVVTSN SLLSSYPTFG SSSSTTTTSP TMASLLASSL HQQKFMNGGV KSTQGPNHFN 240 TLPSFEELQM TVNGDARMAM KDVKAEDDQN RMDWSVPCQN QMEQLGLSDP TLYWNATSVG 300 SWHDPSNIGS SVTSLI |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007025580.2 | 1e-169 | PREDICTED: dof zinc finger protein DOF1.4 | ||||
TrEMBL | A0A061GGE9 | 1e-167 | A0A061GGE9_THECC; F-box family protein, putative | ||||
STRING | EOY28202 | 1e-168 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4709 | 26 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28310.1 | 1e-43 | Dof family protein |