PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_1707_f_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family Dof
Protein Properties Length: 316aa    MW: 34577.3 Da    PI: 8.8346
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_1707_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.12.3e-391878262
         zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                   +++ lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++
  Neem_1707_f_2 18 QQQPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 78
                   6899******************************************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-291776IPR003851Zinc finger, Dof-type
PfamPF027011.2E-332076IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.5252276IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102460IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MASTSRLMEK PGQEAPQQQQ PLKCPRCDSS NTKFCYYNNY SLSQPRHFCK ACKRYWTRGG  60
TLRNVPVGGG CRKNKRVKRP ASSIDGSSST PSANPNPPTQ PQIDISSTSN HINPLFYGLS  120
RNPSDFNLPF SRFNSRVSSV DTVSGYDLQP QLNALGLGFS TGILSNDAGD SNYRNGFNPN  180
KQIQDVVTSN SLLSSYPTFG SSSSTTTTSP TMASLLASSL HQQKFMNGGV KSTQGPNHFN  240
TLPSFEELQM TVNGDARMAM KDVKAEDDQN RMDWSVPCQN QMEQLGLSDP TLYWNATSVG  300
SWHDPSNIGS SVTSLI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007025580.21e-169PREDICTED: dof zinc finger protein DOF1.4
TrEMBLA0A061GGE91e-167A0A061GGE9_THECC; F-box family protein, putative
STRINGEOY282021e-168(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47092650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28310.11e-43Dof family protein