PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_1707_a_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | SBP | ||||||||
Protein Properties | Length: 155aa MW: 17043.3 Da PI: 10.1663 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 75.4 | 9.1e-24 | 52 | 99 | 1 | 48 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 +Cqve+C+ad+s+ak+yhrrhkvCe+h+ka+vv v+gl+qrfCqqCs Neem_1707_a_2 52 TCQVENCTADFSDAKKYHRRHKVCEFHAKAAVVRVAGLQQRFCQQCSS 99 6*********************************************95 PP | |||||||
2 | SBP | 35.1 | 3.5e-11 | 121 | 146 | 52 | 77 |
TTT--SS--S-STTTT-------S-- CS SBP 52 lsefDeekrsCrrrLakhnerrrkkq 77 ++fD++krsCrrrLa+hnerrrk + Neem_1707_a_2 121 TTKFDDTKRSCRRRLAGHNERRRKGA 146 579********************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.3E-24 | 46 | 132 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 24.128 | 50 | 145 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 9.12E-28 | 52 | 145 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 8.4E-19 | 53 | 99 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.6E-5 | 121 | 144 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MDTSKAEGKR SLKEVVEDXX XXXXXDVVGF GDDDKKKKGK RVSSGAGGSS ITCQVENCTA 60 DFSDAKKYHR RHKVCEFHAK AAVVRVAGLQ QRFCQQCSSN GSIPSHGGQT VPSIAISNKQ 120 TTKFDDTKRS CRRRLAGHNE RRRKGAAEYH GEGLN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-28 | 43 | 144 | 2 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017978773.1 | 4e-50 | PREDICTED: squamosa promoter-binding-like protein 3 isoform X1 | ||||
Swissprot | Q38741 | 3e-38 | SBP1_ANTMA; Squamosa promoter-binding protein 1 | ||||
TrEMBL | A0A1R3H4E4 | 4e-50 | A0A1R3H4E4_9ROSI; Squamosa promoter-binding-like protein | ||||
STRING | EOY28200 | 4e-49 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM868 | 28 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33810.1 | 2e-34 | squamosa promoter binding protein-like 3 |
Publications ? help Back to Top | |||
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