PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_16858_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family Dof
Protein Properties Length: 303aa    MW: 33794.4 Da    PI: 4.5204
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_16858_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.37.2e-381369662
          zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                     +cprC s ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn++++
  Neem_16858_f_1 13 PSCPRCASPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRAK 69
                    58****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074788.0E-29167IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.5841367IPR003851Zinc finger, Dof-type
PfamPF027019.8E-321467IPR003851Zinc finger, Dof-type
PROSITE patternPS0136101551IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MEMKWKSNVE LAPSCPRCAS PNTKFCYYNN YSLSQPRYFC KGCRRYWTKG GSLRNVPVGG  60
GCRKNRRAKS ARRVSENERV PVKSFSSSDD NRNEQQTGND EGESSTVGQN GGSDIDLAVV  120
FAKFLNESSS SQPQEITNNA FSNSSTPETG QNDGILIQNP SNHIIEDANL LEEFPQVFDI  180
GEKQDFLEND MNGYGLQTLL RDETVQDALM LCGLMLLLEL SRTLIGSGNG YGLQTLLRDE  240
TVQDALWTDA AAGTLPNFNW QRMFQLQNFD SFLGDGQLKA SANVMTDQWS SFDLSGFEVY  300
SRP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4305173e-46AM430517.1 Vitis vinifera contig VV78X165735.2, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434423.21e-100dof zinc finger protein DOF1.2
TrEMBLA0A2H5NIU12e-98A0A2H5NIU1_CITUN; Uncharacterized protein
TrEMBLV4SJ042e-98V4SJ04_9ROSI; Uncharacterized protein
STRINGXP_006434423.13e-99(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64622643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21340.13e-43Dof family protein