PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_1683_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MYB_related | ||||||||
Protein Properties | Length: 150aa MW: 16550 Da PI: 10.9588 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.5 | 2e-10 | 5 | 55 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v ++G+g W+t + + R+ ++k++w++ Neem_1683_f_2 5 KQKWTAEEEAALKAGVVKHGTGKWRTTLSDPEfsailQSRSNVDLKDKWRN 55 79************************888888******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.419 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.44E-15 | 2 | 66 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-4 | 4 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-12 | 4 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.3E-6 | 5 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 4.56E-17 | 6 | 57 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MGAPKQKWTA EEEAALKAGV VKHGTGKWRT TLSDPEFSAI LQSRSNVDLK DKWRNINVTA 60 IWGSPQKAKL ALKRTSSTPK HDGRTPVTSK RDAKSQLTPK HDSRIHLTPN HDENGGLKLI 120 ASSTISHLMK KVTKMVHVIL DESAAKISNK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024947953.1 | 2e-59 | telomere repeat-binding factor 2 isoform X1 | ||||
Swissprot | Q9FJW5 | 1e-39 | TRB2_ARATH; Telomere repeat-binding factor 2 | ||||
TrEMBL | V4UJ20 | 6e-58 | V4UJ20_9ROSI; Uncharacterized protein | ||||
STRING | XP_006426109.1 | 1e-58 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3809 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67580.2 | 5e-42 | MYB_related family protein |
Publications ? help Back to Top | |||
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