PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_16822_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | NAC | ||||||||
Protein Properties | Length: 327aa MW: 37537.3 Da PI: 9.9955 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 77.6 | 2.8e-24 | 19 | 139 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgk.........rknratksgyWkatg 87 pG+rF+Pt ee++ +yL+kk + ++ + ++i+e+diy++ePwdL ++++e+y Fs+ ++k ++gk +r+t++g Wk g Neem_16822_f_1 19 LPGYRFSPTGEEII-DYLEKKRLDPDNFCVDMIQELDIYSYEPWDLA----GTKSEVYIFSEPRSKGENGKprpkgkngkLFHRKTTKGCWKING 108 59************.99*99988888777799**************7....34679******9999986554333333326667799******** PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 k +v + +g k+tL f +g++ +t+W mhe+ Neem_16822_f_1 109 KGSKVNR-----IGRKRTLSFRRGQS----NTEWAMHEFY 139 ***9988.....9********95543....68******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.11E-29 | 17 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 26.672 | 18 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.0E-16 | 20 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MDSFRSITAP REVALRKSLP GYRFSPTGEE IIDYLEKKRL DPDNFCVDMI QELDIYSYEP 60 WDLAGTKSEV YIFSEPRSKG ENGKPRPKGK NGKLFHRKTT KGCWKINGKG SKVNRIGRKR 120 TLSFRRGQSN TEWAMHEFYI TEEDSRYKKD FVLCVVRKKR KWDKKRGVST NEGQSNQKLV 180 PCSGQPLPEN TISKTVPVKQ PSNNLVSNRK QTTEDIFLKT QLPPSNPPIS YYRNQGEENH 240 ILYSQQVSGD TMISSSRNVA GNDSPEPQQQ LPYHNMIPYD QNHVANGYPA SQQQQQLPNQ 300 DMIPSHGKRV VGSEIIFYKM LAESRSN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-13 | 20 | 160 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-13 | 20 | 160 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-13 | 20 | 160 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-13 | 20 | 160 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-13 | 20 | 160 | 22 | 169 | NAC domain-containing protein 19 |
3swm_B | 4e-13 | 20 | 160 | 22 | 169 | NAC domain-containing protein 19 |
3swm_C | 4e-13 | 20 | 160 | 22 | 169 | NAC domain-containing protein 19 |
3swm_D | 4e-13 | 20 | 160 | 22 | 169 | NAC domain-containing protein 19 |
3swp_A | 4e-13 | 20 | 160 | 22 | 169 | NAC domain-containing protein 19 |
3swp_B | 4e-13 | 20 | 160 | 22 | 169 | NAC domain-containing protein 19 |
3swp_C | 4e-13 | 20 | 160 | 22 | 169 | NAC domain-containing protein 19 |
3swp_D | 4e-13 | 20 | 160 | 22 | 169 | NAC domain-containing protein 19 |
4dul_A | 3e-13 | 20 | 160 | 19 | 166 | NAC domain-containing protein 19 |
4dul_B | 3e-13 | 20 | 160 | 19 | 166 | NAC domain-containing protein 19 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13336 | 4 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10490.1 | 1e-19 | NAC domain containing protein 52 |