PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_16815_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MYB_related | ||||||||
Protein Properties | Length: 92aa MW: 10529.2 Da PI: 9.2739 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.3 | 3.7e-18 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l+++++ +G g W++ a+ g++Rt+k+c++rw++yl Neem_16815_f_1 15 KGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYL 62 79*********************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-25 | 7 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.216 | 10 | 66 | IPR017930 | Myb domain |
SMART | SM00717 | 7.2E-13 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-17 | 15 | 62 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.42E-23 | 16 | 90 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.94E-10 | 17 | 62 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-8 | 66 | 89 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 92 aa Download sequence Send to blast |
MDKAPCNSQD AEVRKGPWTM EEDLILINYI ANHGEGVWNS LAKAAGLKRT GKSCRLRWLN 60 YLRPDVKRGN ITPEEQLLIM DLHAKWGNRL VL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-15 | 10 | 89 | 22 | 100 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006446526.1 | 5e-61 | myb-related protein 305 isoform X2 | ||||
Refseq | XP_024950397.1 | 6e-61 | myb-related protein 305 isoform X2 | ||||
Swissprot | P81391 | 1e-58 | MYB05_ANTMA; Myb-related protein 305 | ||||
TrEMBL | V4UC01 | 1e-59 | V4UC01_9ROSI; Uncharacterized protein | ||||
STRING | XP_006470308.1 | 1e-58 | (Citrus sinensis) | ||||
STRING | XP_006446527.1 | 2e-58 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G40350.1 | 1e-54 | myb domain protein 24 |
Publications ? help Back to Top | |||
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