PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_16726_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | ERF | ||||||||
Protein Properties | Length: 209aa MW: 22939.1 Da PI: 4.5064 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.1 | 2.1e-18 | 24 | 74 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ykGVr +k +g+Wv+eIr p++ r r++lg+++ +e+Aa+a +aa +l+g Neem_16726_f_1 24 PKYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDAPEKAARAFDAALFCLRG 74 79*****999.**********933...5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.51E-29 | 24 | 84 | No hit | No description |
Pfam | PF00847 | 2.8E-11 | 24 | 74 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-29 | 25 | 83 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-20 | 25 | 83 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.1E-33 | 25 | 88 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.852 | 25 | 82 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.7E-9 | 26 | 37 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.7E-9 | 48 | 64 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MVKPSEQTTS ELRSSSSSST SSEPKYKGVR KRKWGKWVSE IRLPNSRERI WLGSYDAPEK 60 AARAFDAALF CLRGPNAKFN FPDNPPSDIA GVGERSLTPP EIQVVAARFA NEEPVRNSSS 120 ASGSASHSTT SDGGAVHVDS DMAIDWSFLS MLDSNEGASD FGLYSGMEYN MNMNITSDHD 180 LYPATEPTFD DNGEDQNGFP QTSSFLWNF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-14 | 25 | 82 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 26 | 32 | KGVRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00151 | DAP | Transfer from AT1G19210 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006452945.1 | 2e-83 | ethylene-responsive transcription factor ERF017 | ||||
Swissprot | Q84QC2 | 2e-52 | ERF17_ARATH; Ethylene-responsive transcription factor ERF017 | ||||
TrEMBL | V4UPI9 | 3e-82 | V4UPI9_9ROSI; Uncharacterized protein | ||||
STRING | XP_006452945.1 | 6e-83 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1614 | 28 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 1e-49 | ERF family protein |
Publications ? help Back to Top | |||
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