PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_16663_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

Trihelix

Protein Properties

Length: 545aa MW: 62219 Da PI: 7.0773

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_16663_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	94.8	8.4e-30	100	185	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea Neem_16663_f_1 100 RWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 185 8***********************************999*************************98..55667*****85 PP
2	trihelix	67.9	2e-21	387	472	2	83
trihelix 2 WtkqevlaLiearremeerlrrgk...lkkplWeevskkmrergfer.spkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 W ++e+ +Li++r++me+r+++++ +++ lWee+++km g+er ++ +Ck+kw+n+n +k+k+ ++k+++e+s++c+yf+ Neem_16663_f_1 387 WGDSEITKLIQLRTSMETRFQQSNtesSQEVLWEEIAAKMVCLGYERrNALMCKDKWDNINHFLRKTKDLSNKKRKENSRSCSYFQ 472 *******************86433399************7769**********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.004	93	158	IPR017877	Myb-like domain
SMART	SM00717	0.55	97	160	IPR001005	SANT/Myb domain
Pfam	PF13837	1.4E-20	100	186	No hit	No description
CDD	cd12203	1.31E-20	100	165	No hit	No description
PROSITE profile	PS50090	6.435	379	447	IPR017877	Myb-like domain
SMART	SM00717	0.088	383	449	IPR001005	SANT/Myb domain
Pfam	PF13837	6.6E-14	385	475	No hit	No description
CDD	cd12203	2.71E-21	387	454	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009909	Biological Process	regulation of flower development
GO:0010200	Biological Process	response to chitin
GO:0046621	Biological Process	negative regulation of organ growth
GO:0048442	Biological Process	sepal development
GO:0048498	Biological Process	establishment of petal orientation
GO:0090428	Biological Process	perianth development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence Send to blast
MPDLRQFMNG RPAHFPAIAQ AAELFPGHRN LTPQGHHYEM LMVGRQVNEL MPRGLQDFNT 60 SAANTSITSV AVTASVSTPS FSGLEGEAAG CFGADGGNGR WPRQETLTLL EIRSRLDSKF 120 KEANQKGPLW DEVSRIMSEE HGYQRSGKKC REKFENLYKY YKKTKEGKAG RQDGKHYRFF 180 RQLEALYGDS SNSVSVPETH LVGSSLRFHT TSNTSNQANQ ETLQSQKLCD SLSLSNSSEF 240 ESSSSDDNDL CTMENDSTDK RRKKRGRRGW KIKIKEFIDS QMRKLMERQE AWLEKLTKTL 300 EIKEQERILR EEEWRRQEES RIDREHKFWA KERAWIEARD AALMEALQNL TGRQLKTSSS 360 EELIAADNQN ENGSEAINNS VKATDSWGDS EITKLIQLRT SMETRFQQSN TESSQEVLWE 420 EIAAKMVCLG YERRNALMCK DKWDNINHFL RKTKDLSNKK RKENSRSCSY FQSNDSSLYS 480 QGGAAYCELN EQGPETARLQ LNDSSSPSNS NVGNAVSDSC FRFLMADGDH LWDNYGLKLG 540 NGENQ

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence Send to blast

MPDLRQFMNG RPAHFPAIAQ AAELFPGHRN LTPQGHHYEM LMVGRQVNEL MPRGLQDFNT  60
SAANTSITSV AVTASVSTPS FSGLEGEAAG CFGADGGNGR WPRQETLTLL EIRSRLDSKF  120
KEANQKGPLW DEVSRIMSEE HGYQRSGKKC REKFENLYKY YKKTKEGKAG RQDGKHYRFF  180
RQLEALYGDS SNSVSVPETH LVGSSLRFHT TSNTSNQANQ ETLQSQKLCD SLSLSNSSEF  240
ESSSSDDNDL CTMENDSTDK RRKKRGRRGW KIKIKEFIDS QMRKLMERQE AWLEKLTKTL  300
EIKEQERILR EEEWRRQEES RIDREHKFWA KERAWIEARD AALMEALQNL TGRQLKTSSS  360
EELIAADNQN ENGSEAINNS VKATDSWGDS EITKLIQLRT SMETRFQQSN TESSQEVLWE  420
EIAAKMVCLG YERRNALMCK DKWDNINHFL RKTKDLSNKK RKENSRSCSY FQSNDSSLYS  480
QGGAAYCELN EQGPETARLQ LNDSSSPSNS NVGNAVSDSC FRFLMADGDH LWDNYGLKLG  540
NGENQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	259	267	KRRKKRGRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269\|PubMed:10572040, ECO:0000269\|PubMed:15269176, ECO:0000269\|PubMed:18080804}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269\|PubMed:15269176}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022743398.1	0.0	trihelix transcription factor PTL-like
Swissprot	Q9LZS0	1e-156	PTL_ARATH; Trihelix transcription factor PTL
TrEMBL	A0A061ESW5	0.0	A0A061ESW5_THECC; Duplicated homeodomain-like superfamily protein, putative
STRING	EOY08130	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2767	28	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	1e-131	Trihelix family protein

Publications ? help Back to Top
Quon T,Lampugnani ER,Smyth DR PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 152 [PMID:28228771]