PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_16511_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 347aa    MW: 38232.9 Da    PI: 10.1793
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_16511_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.94e-12555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +v ++G+g W+tI +        + R+  ++k++w++
   Neem_16511_f_1  5 KQKWTAEEEAALKAGVVKHGTGKWRTILSDPEfsailQSRSNVDLKDKWRN 55
                     79************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.524161IPR017930Myb domain
SuperFamilySSF466896.43E-16271IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-13456IPR009057Homeodomain-like
SMARTSM007171.8E-7459IPR001005SANT/Myb domain
PfamPF002492.9E-8555IPR001005SANT/Myb domain
CDDcd116609.43E-19657No hitNo description
SuperFamilySSF467852.18E-16146219IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005269.9E-13148211IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150423.724148216IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.1E-14149217IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005382.1E-10153209IPR005818Linker histone H1/H5, domain H15
CDDcd000732.59E-10155211No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043047Molecular Functionsingle-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGV VKHGTGKWRT ILSDPEFSAI LQSRSNVDLK DKWRNINVTA  60
IWGSRQKAKL ALKRTSWTPK HDGRTPVTSK RDAKSQLTPK HDGRIHLTPK HDENPMALST  120
IPQNDGVVDA KPLAISSGTV RASGSKEPVA RLDKLIMEAI ANLKEPSGSD RASIMNYIEE  180
QYWAPANLRK LLATKLKFLT ANGTLMKVKH KYRIAPTMPD SVLTRSPELL LEGRQNNSPR  240
AQKRDINILT KSQVDADLSR MKGMTAQEAA VAAAQAVAEA EVAIAEAEEA EREAERAEAE  300
AEAAQVFAKA AINALKCRTL HTWARLVNLE VVRLTPFECC HYSIIGL
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00626PBMTransfer from PK06103.1Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024036767.11e-167telomere repeat-binding factor 2 isoform X1
SwissprotQ9FJW54e-79TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBLA0A2H5PCL11e-165A0A2H5PCL1_CITUN; Uncharacterized protein
STRINGXP_006466448.11e-166(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38092759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67580.23e-70MYB_related family protein
Publications ? help Back to Top
  1. Lee WK,Cho MH
    Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana.
    Nucleic Acids Res., 2016. 44(10): p. 4610-24
    [PMID:26857545]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]