PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_16489_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | NAC | ||||||||
Protein Properties | Length: 135aa MW: 15519.6 Da PI: 9.1252 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 25.8 | 3e-08 | 11 | 56 | 2 | 49 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk 49 pGf F P+++e+v Lk+k ++++l++ e k++d y++eP+dLp Neem_16489_f_1 11 LPGFGFCPNNSEIV-TLLKNKEANSTLNV-EYCKDIDFYNHEPEDLPI 56 69************.89*********999.89**************93 PP | |||||||
2 | NAM | 28.5 | 4.3e-09 | 65 | 112 | 78 | 128 |
NAM 78 tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++g W+ tg+ ke+++++g++ ++++++ + +gekt+W+m+ey+l Neem_16489_f_1 65 PRKGSWRMTGSFKEIKDESGKASAEENSFTYH---KVNGEKTQWLMKEYTL 112 469****************************9...789999********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.23E-19 | 8 | 129 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 11.062 | 10 | 129 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-8 | 12 | 112 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MASSSTNSTF LPGFGFCPNN SEIVTLLKNK EANSTLNVEY CKDIDFYNHE PEDLPIVLVK 60 NIQTPRKGSW RMTGSFKEIK DESGKASAEE NSFTYHKVNG EKTQWLMKEY TLLKQNKISQ 120 WAFCVVYHKR SPKTK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77450.1 | 5e-12 | NAC domain containing protein 32 |