PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_16434_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 355aa    MW: 41602.3 Da    PI: 6.352
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_16434_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM34.75.2e-11250150
             NAM  1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkk 50
                    +p GfrF+Ptdeel+ e L++kv+g++  +l+++i e ++y+++P+ L+ +
  Neem_16434_f_1  2 VPTGFRFNPTDEELI-EILEQKVSGHQmAPLFNFIVERNVYDYDPQYLQ-C 50
                    589************.88*******996677889**************8.2 PP
2NAM52.81.3e-167217131128
             NAM  31 eevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfy.....kgrapkge 117
                     +++i e ++y+++P++L+   +++  e+e y ++ +++ +      + +t +g Wkat + k+++sk +++ +g ++ L+f+     + +++++ 
  Neem_16434_f_1  72 FSFIVERNVYDYDPQHLQwDyTAAVPENERYCYCMKENDS------REVTGRGWWKATSHVKKIYSKnGSRFIGYRRPLTFHrfkdnQRNRSNAI 160
                     467999***********9533444577899*****98753......45999***************956667**********7776546677788 PP

             NAM 118 ktdWvmheyrl 128
                     kt+W+mhe++l
  Neem_16434_f_1 161 KTNWIMHEFSL 171
                     *********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.85E-9252IPR003441NAC domain
PROSITE profilePS5100529.2292186IPR003441NAC domain
PfamPF023656.2E-163171IPR003441NAC domain
SuperFamilySSF1019414.84E-2272186IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MVPTGFRFNP TDEELIEILE QKVSGHQMAP LFNFIVERNV YDYDPQYLQC MSLKLPSLFS  60
SLSFLSTYFT HFSFIVERNV YDYDPQHLQW DYTAAVPENE RYCYCMKEND SREVTGRGWW  120
KATSHVKKIY SKNGSRFIGY RRPLTFHRFK DNQRNRSNAI KTNWIMHEFS LQSRTTDWRL  180
CKIKYKGKPS LQEELENVRN GFKSRNDFEA SSYNSGSPIM GMQQQPAQTV ELEQLEIASY  240
DPFFTQIMNT NNSSELENTR NGFKITNDFE ISSSSTTTVM GMRMGMGMQQ QQQQQHSEAL  300
EHEQQQLIKA SYDPFLTQIP STNNYYDSGN HSHQLEQAAD SSVQISFPSN WSWQN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006478770.14e-90NAC domain-containing protein 83-like
RefseqXP_024043270.14e-90NAC domain-containing protein 83-like
TrEMBLA0A067DWW21e-83A0A067DWW2_CITSI; Uncharacterized protein
STRINGXP_006478770.12e-89(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16224614
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.17e-17NAC domain containing protein 94