PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_16093_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 298aa    MW: 33110.7 Da    PI: 6.8635
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_16093_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72e-161460145
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwq 45
                     +g W++eEde+l+++++++G g+W+++++      gRt++++k++w+
   Neem_16093_f_1 14 KGLWSPEEDEKLLNYITKHGHGCWSSVPKLAAqlPGRTDNEIKNFWN 60
                     678*************************9999999***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-24672IPR009057Homeodomain-like
SuperFamilySSF466897.59E-16773IPR009057Homeodomain-like
PROSITE profilePS5129420.297967IPR017930Myb domain
SMARTSM007177.6E-131365IPR001005SANT/Myb domain
PfamPF002498.8E-141461IPR001005SANT/Myb domain
CDDcd001671.89E-131760No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MGKHSCCYKQ KMRKGLWSPE EDEKLLNYIT KHGHGCWSSV PKLAAQLPGR TDNEIKNFWN  60
SSIKKKLRQK GIDPNTHKPI SETIDKQKQL TAGKENSEKI SEDSESAAAI KNTNMTNIVH  120
TQEFFLNKFS VSNETTSTNC KPALPGYLPF QDLNFGHMGM NTNSSFCFNT NNSSSSSEFN  180
SSMIPTISSS VFQGPIRVKP SISLPSDNPS SDIHGIQNWE ASSFSNNVSS TSNGSTASIE  240
LQSNNSFFEN NVFSWGLTTD CGKPVEEELK WSEYLNTPFL LGNSLQNQTS QAMYSDVN
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024035251.11e-117transcription factor MYB61
SwissprotQ8VZQ22e-61MYB61_ARATH; Transcription factor MYB61
TrEMBLA0A2Z4Z3061e-116A0A2Z4Z306_CITSI; MYB61 (Fragment)
STRINGXP_006480338.11e-116(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.14e-58myb domain protein 61
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Matías-Hernández L, et al.
    AaMYB1 and its orthologue AtMYB61 affect terpene metabolism and trichome development in Artemisia annua and Arabidopsis thaliana.
    Plant J., 2017. 90(3): p. 520-534
    [PMID:28207974]