PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_16093_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MYB_related | ||||||||
Protein Properties | Length: 298aa MW: 33110.7 Da PI: 6.8635 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.7 | 2e-16 | 14 | 60 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwq 45 +g W++eEde+l+++++++G g+W+++++ gRt++++k++w+ Neem_16093_f_1 14 KGLWSPEEDEKLLNYITKHGHGCWSSVPKLAAqlPGRTDNEIKNFWN 60 678*************************9999999***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-24 | 6 | 72 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.59E-16 | 7 | 73 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.297 | 9 | 67 | IPR017930 | Myb domain |
SMART | SM00717 | 7.6E-13 | 13 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.8E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.89E-13 | 17 | 60 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MGKHSCCYKQ KMRKGLWSPE EDEKLLNYIT KHGHGCWSSV PKLAAQLPGR TDNEIKNFWN 60 SSIKKKLRQK GIDPNTHKPI SETIDKQKQL TAGKENSEKI SEDSESAAAI KNTNMTNIVH 120 TQEFFLNKFS VSNETTSTNC KPALPGYLPF QDLNFGHMGM NTNSSFCFNT NNSSSSSEFN 180 SSMIPTISSS VFQGPIRVKP SISLPSDNPS SDIHGIQNWE ASSFSNNVSS TSNGSTASIE 240 LQSNNSFFEN NVFSWGLTTD CGKPVEEELK WSEYLNTPFL LGNSLQNQTS QAMYSDVN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024035251.1 | 1e-117 | transcription factor MYB61 | ||||
Swissprot | Q8VZQ2 | 2e-61 | MYB61_ARATH; Transcription factor MYB61 | ||||
TrEMBL | A0A2Z4Z306 | 1e-116 | A0A2Z4Z306_CITSI; MYB61 (Fragment) | ||||
STRING | XP_006480338.1 | 1e-116 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09540.1 | 4e-58 | myb domain protein 61 |
Publications ? help Back to Top | |||
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