PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_15944_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

FAR1

Protein Properties

Length: 476aa MW: 54134.9 Da PI: 6.3749

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_15944_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	34	9.7e-11	138	200	2	65
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkak 65 fYn Y+k vGFsvrk++++++ +ng i+ r++ Csk+ +r++++ +++++++ + + C+ + Neem_15944_f_1 138 FYNMYSKLVGFSVRKDEMRYN-KNGLIIARRWACSKQRHRARKHVERREHSEIHRVGVQRCHSM 200 9**************9999.7888************999888555555555555556655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.0E-7	138	200	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	8.271	396	432	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.9E-4	407	434	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence Send to blast
MSFVEEDRVA VQLNVETSAL QLNGSNADSS TGNYALNGSG DDWLQLNGSN ADSSTGNYAL 60 NGSGDDCSVH DLDSYVRTSV CSACDFQISE GGTSSFGIDI PANGLSIVQC TDPTRLRDLT 120 TSDVIGKKFD SIDNAELFYN MYSKLVGFSV RKDEMRYNKN GLIIARRWAC SKQRHRARKH 180 VERREHSEIH RVGVQRCHSM DYMNDKAEGC DIVEFIGKEL QNKIDDGCSS SVTAAESEPA 240 IAYFYAKAEM DPHFFYKYTV DKDKGLGNLR DGGAYNWLLE TLCAMNNKKP LSIDNGWVRK 300 MYEKCNLWAV SFLRGQFFAG THNIKYGETL NSYLKYLSQS RMKERAVSRI RYTEGKDDLI 360 QNKIRDEAVL IISDCANVTD SQVYTLTKFR NPQMRWTVVY LQNNHHIQCL CMEFETVGIP 420 CSHYFCIMKA EHLDRIPDNL VLKRWTNDAK VYEDLAFNSR ENQNQTVEMV RFGPLM

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence Send to blast

MSFVEEDRVA VQLNVETSAL QLNGSNADSS TGNYALNGSG DDWLQLNGSN ADSSTGNYAL  60
NGSGDDCSVH DLDSYVRTSV CSACDFQISE GGTSSFGIDI PANGLSIVQC TDPTRLRDLT  120
TSDVIGKKFD SIDNAELFYN MYSKLVGFSV RKDEMRYNKN GLIIARRWAC SKQRHRARKH  180
VERREHSEIH RVGVQRCHSM DYMNDKAEGC DIVEFIGKEL QNKIDDGCSS SVTAAESEPA  240
IAYFYAKAEM DPHFFYKYTV DKDKGLGNLR DGGAYNWLLE TLCAMNNKKP LSIDNGWVRK  300
MYEKCNLWAV SFLRGQFFAG THNIKYGETL NSYLKYLSQS RMKERAVSRI RYTEGKDDLI  360
QNKIRDEAVL IISDCANVTD SQVYTLTKFR NPQMRWTVVY LQNNHHIQCL CMEFETVGIP  420
CSHYFCIMKA EHLDRIPDNL VLKRWTNDAK VYEDLAFNSR ENQNQTVEMV RFGPLM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	4e-10	far-red elongated hypocotyls 3