PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_15704_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 400aa MW: 44151.2 Da PI: 8.7969

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_15704_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.4	5.9e-09	221	268	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Neem_15704_f_1 221 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 268 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.96E-17	215	287	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.20E-10	215	272	No hit	No description
PROSITE profile	PS50888	15.663	217	267	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.7E-17	217	285	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.9E-6	221	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.5E-10	223	273	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MDPQIRGNLP IPGNHLPSHP NLEALSADPG FAERAARLSC FAGRNGLSEI ELSQSQRLMI 60 HRSESGKLSR VSSNQSMKVA GSHQENNSSP QDGNSVSRKK FSRLSRSSTP EIAEFCDSKE 120 ESSVSEQIQA AQNDVNARKR KSIPRGKAAK AKETQSSSPS TNDAKVVSEN EESNSKRSKQ 180 DHSNGNENDG NQKQNKDNSK PPEPPKDYIH VRARRGQATD SHSLAERVRR EKISERMKFL 240 QDLVPGCNKV TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT VNPRMDFNME ALLSKEMLQS 300 RESVYAIPID SSAQALFPFG FQEQAGVPLS ADFSTALRRN PNMQLPPPPL IGGYSDSGSQ 360 VASLWEDDLQ SLVQMGLNQN QPQSFNGSMA TAQPQMKIEM

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MDPQIRGNLP IPGNHLPSHP NLEALSADPG FAERAARLSC FAGRNGLSEI ELSQSQRLMI  60
HRSESGKLSR VSSNQSMKVA GSHQENNSSP QDGNSVSRKK FSRLSRSSTP EIAEFCDSKE  120
ESSVSEQIQA AQNDVNARKR KSIPRGKAAK AKETQSSSPS TNDAKVVSEN EESNSKRSKQ  180
DHSNGNENDG NQKQNKDNSK PPEPPKDYIH VRARRGQATD SHSLAERVRR EKISERMKFL  240
QDLVPGCNKV TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT VNPRMDFNME ALLSKEMLQS  300
RESVYAIPID SSAQALFPFG FQEQAGVPLS ADFSTALRRN PNMQLPPPPL IGGYSDSGSQ  360
VASLWEDDLQ SLVQMGLNQN QPQSFNGSMA TAQPQMKIEM

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00376	DAP	Transfer from AT3G23690	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007034153.2	1e-165	PREDICTED: transcription factor bHLH62
Swissprot	Q9LK48	9e-75	BH077_ARATH; Transcription factor bHLH77
TrEMBL	A0A061ERY9	1e-162	A0A061ERY9_THECC; Basic helix-loop-helix DNA-binding superfamily protein isoform 1
STRING	EOY05079	1e-163	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7406	20	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23690.1	4e-74	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]