PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_15575_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 519aa    MW: 58551.1 Da    PI: 7.6658
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_15575_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.73.8e-52141411128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     l pGfrFhPtdeelv +yLk+k+++++l++ e ik++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+
  Neem_15575_f_1  14 LLPGFRFHPTDEELVGFYLKRKIQQRPLSI-ELIKQLDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSS 107
                     579***************************.89***************8888999***************************************9 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++ +glkk+Lvfykg+a kg ktdW+mhe+rl
  Neem_15575_f_1 108 eGSKCIGLKKSLVFYKGKAAKGIKTDWMMHEFRL 141
                     56677***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-5712172IPR003441NAC domain
PROSITE profilePS5100557.3714172IPR003441NAC domain
PfamPF023652.5E-2516141IPR003441NAC domain
Gene3DG3DSA:1.20.1050.101.7E-10404512IPR010987Glutathione S-transferase, C-terminal-like
SuperFamilySSF476166.33E-10406511IPR010987Glutathione S-transferase, C-terminal-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MGERSDTDKL DEVLLPGFRF HPTDEELVGF YLKRKIQQRP LSIELIKQLD IYKYDPWDLP  60
KLATTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSEGS KCIGLKKSLV  120
FYKGKAAKGI KTDWMMHEFR LPSLTDSVPP KRFMDKTFPA NDSWAICRIF KKTNSSAQRA  180
LSQSWVSPLP ESSNTSATDA QAKCCYNTRF SSENLSLLRG KNSSSTQFNY NYDLQQPSSS  240
ATTTTFSPLD FLPYKTINPM ISKSNQLPIS TGDLTTNFVF SPFEPTIPAK CNIDLSSMLL  300
NVSSTMLGDF SKASECIDFG GSQDQCSDFS TTTTGLPNEM QVVNISNGSD HGNVSLKHQN  360
LMQNFDDQWE NTVRSIGFPF SLPMSMAETW KPNSWWDPSS CPTTTFPIIS SEGEGRENAM  420
ANFHELLRVF EEGIVKDFPT KSLYFNGGDR LGFLGILVAA NSCNYQAFEE ALALDFELKN  480
HQTFLSWVDA VKSSPLVKQT VPPRHKLIAK IRENFLQPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-5561798171NO APICAL MERISTEM PROTEIN
1ut4_B8e-5561798171NO APICAL MERISTEM PROTEIN
1ut7_A8e-5561798171NO APICAL MERISTEM PROTEIN
1ut7_B8e-5561798171NO APICAL MERISTEM PROTEIN
4dul_A8e-5561798171NAC domain-containing protein 19
4dul_B8e-5561798171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006438680.10.0protein FEZ
RefseqXP_006483697.10.0protein FEZ
SwissprotQ9ZVH01e-110FEZ_ARATH; Protein FEZ
TrEMBLA0A2H5N8T80.0A0A2H5N8T8_CITUN; Uncharacterized protein
TrEMBLV4TJW60.0V4TJW6_9ROSI; Uncharacterized protein
STRINGXP_006483697.10.0(Citrus sinensis)
STRINGXP_006438680.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-109NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]