PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Neem_15575_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 519aa MW: 58551.1 Da PI: 7.6658 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.7 | 3.8e-52 | 14 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 l pGfrFhPtdeelv +yLk+k+++++l++ e ik++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ Neem_15575_f_1 14 LLPGFRFHPTDEELVGFYLKRKIQQRPLSI-ELIKQLDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSS 107 579***************************.89***************8888999***************************************9 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +glkk+Lvfykg+a kg ktdW+mhe+rl Neem_15575_f_1 108 eGSKCIGLKKSLVFYKGKAAKGIKTDWMMHEFRL 141 56677***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-57 | 12 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.37 | 14 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.5E-25 | 16 | 141 | IPR003441 | NAC domain |
Gene3D | G3DSA:1.20.1050.10 | 1.7E-10 | 404 | 512 | IPR010987 | Glutathione S-transferase, C-terminal-like |
SuperFamily | SSF47616 | 6.33E-10 | 406 | 511 | IPR010987 | Glutathione S-transferase, C-terminal-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 519 aa Download sequence Send to blast |
MGERSDTDKL DEVLLPGFRF HPTDEELVGF YLKRKIQQRP LSIELIKQLD IYKYDPWDLP 60 KLATTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSEGS KCIGLKKSLV 120 FYKGKAAKGI KTDWMMHEFR LPSLTDSVPP KRFMDKTFPA NDSWAICRIF KKTNSSAQRA 180 LSQSWVSPLP ESSNTSATDA QAKCCYNTRF SSENLSLLRG KNSSSTQFNY NYDLQQPSSS 240 ATTTTFSPLD FLPYKTINPM ISKSNQLPIS TGDLTTNFVF SPFEPTIPAK CNIDLSSMLL 300 NVSSTMLGDF SKASECIDFG GSQDQCSDFS TTTTGLPNEM QVVNISNGSD HGNVSLKHQN 360 LMQNFDDQWE NTVRSIGFPF SLPMSMAETW KPNSWWDPSS CPTTTFPIIS SEGEGRENAM 420 ANFHELLRVF EEGIVKDFPT KSLYFNGGDR LGFLGILVAA NSCNYQAFEE ALALDFELKN 480 HQTFLSWVDA VKSSPLVKQT VPPRHKLIAK IRENFLQPS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-55 | 6 | 179 | 8 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-55 | 6 | 179 | 8 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-55 | 6 | 179 | 8 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-55 | 6 | 179 | 8 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 8e-55 | 6 | 179 | 8 | 171 | NAC domain-containing protein 19 |
4dul_B | 8e-55 | 6 | 179 | 8 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006438680.1 | 0.0 | protein FEZ | ||||
Refseq | XP_006483697.1 | 0.0 | protein FEZ | ||||
Swissprot | Q9ZVH0 | 1e-110 | FEZ_ARATH; Protein FEZ | ||||
TrEMBL | A0A2H5N8T8 | 0.0 | A0A2H5N8T8_CITUN; Uncharacterized protein | ||||
TrEMBL | V4TJW6 | 0.0 | V4TJW6_9ROSI; Uncharacterized protein | ||||
STRING | XP_006483697.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006438680.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM306 | 28 | 200 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G26870.1 | 1e-109 | NAC family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|