PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_1535_f_7

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

G2-like

Protein Properties

Length: 487aa MW: 53871.7 Da PI: 6.5049

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_1535_f_7	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.6	5.9e-33	265	319	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+Fveav++L G+ekAtPk +l+lm+v+gLt++hvkSHLQkYR+ Neem_1535_f_7 265 KPRMRWTPELHECFVEAVNKLDGAEKATPKGVLKLMNVEGLTIYHVKSHLQKYRI 319 79****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.087	262	322	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.3E-32	263	320	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.91E-18	263	319	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.2E-25	265	320	IPR006447	Myb domain, plants
Pfam	PF00249	3.8E-9	267	318	IPR001005	SANT/Myb domain
Pfam	PF14379	5.0E-23	344	390	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence Send to blast
MNHHSIISVT QSESNKGVSQ SCCTALSSIH NFCVERVEHC PSTGECSSPH PSPFIQKESL 60 NSPNHMQVSM VLPQKNCLIA RPDSPMSLGS HLQHSRGTFS RSSCFCTSLY LSSSSSSETH 120 RQLGNLPFLP HPPSYNQSVS AVDSTKSPLL FSEDVGNPYE EEHPESLMKD FLNLPGDASN 180 GSFHGVTCMG DGFNEQLELQ FLSDELDIAI NDHGENPRLD EIYEAPQSSL KPILGLTCNQ 240 NYVPSAPPVD AVSSHPSPGP ASSHKPRMRW TPELHECFVE AVNKLDGAEK ATPKGVLKLM 300 NVEGLTIYHV KSHLQKYRIA KYMPEKKEVA PHMVIFVFRF LRSVQITEAL RMQMEVQKQL 360 HEQLEVQRAL QLRIEEHARY LQKILEEQKK AGSALILPQT QSLSTLNNAS KDSQLQPSSA 420 SVTVNALPDQ AQPVESKTEL SSSSSLPSKH KAIDSRDSKP DACAKRIRLE NKLEPTSDEG 480 VVENPVQ

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence Send to blast

MNHHSIISVT QSESNKGVSQ SCCTALSSIH NFCVERVEHC PSTGECSSPH PSPFIQKESL  60
NSPNHMQVSM VLPQKNCLIA RPDSPMSLGS HLQHSRGTFS RSSCFCTSLY LSSSSSSETH  120
RQLGNLPFLP HPPSYNQSVS AVDSTKSPLL FSEDVGNPYE EEHPESLMKD FLNLPGDASN  180
GSFHGVTCMG DGFNEQLELQ FLSDELDIAI NDHGENPRLD EIYEAPQSSL KPILGLTCNQ  240
NYVPSAPPVD AVSSHPSPGP ASSHKPRMRW TPELHECFVE AVNKLDGAEK ATPKGVLKLM  300
NVEGLTIYHV KSHLQKYRIA KYMPEKKEVA PHMVIFVFRF LRSVQITEAL RMQMEVQKQL  360
HEQLEVQRAL QLRIEEHARY LQKILEEQKK AGSALILPQT QSLSTLNNAS KDSQLQPSSA  420
SVTVNALPDQ AQPVESKTEL SSSSSLPSKH KAIDSRDSKP DACAKRIRLE NKLEPTSDEG  480
VVENPVQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-27	265	322	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-27	265	322	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-27	265	322	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-27	265	322	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-27	265	322	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-27	265	322	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-27	265	322	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-27	265	322	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00354	DAP	Transfer from AT3G13040	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006488616.1	0.0	myb family transcription factor PHL6
Refseq	XP_006488617.1	0.0	myb family transcription factor PHL6
Swissprot	Q949U2	1e-134	PHL6_ARATH; Myb family transcription factor PHL6
TrEMBL	A0A067FLS1	0.0	A0A067FLS1_CITSI; Uncharacterized protein
STRING	XP_006488616.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6786	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	1e-116	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]