PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_1528_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB
Protein Properties Length: 456aa    MW: 50841.2 Da    PI: 8.3763
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_1528_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.6e-18138184148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT eEd +l+++vkq+G + W+ Ia+++  gR +kqc++rw+++l
    Neem_1528_f_1 138 KGQWTDEEDRKLIKLVKQYGVRKWAQIAEKLS-GRAGKQCRERWHNHL 184
                      799*****************************.*************97 PP
2Myb_DNA-binding59.47.9e-19190232145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++W++eE+ llv+a+++ G++ W+ Ia++++ gRt++++k++w+
    Neem_1528_f_1 190 KDSWSEEEERLLVEAHAKVGNR-WAEIAKHIP-GRTENSIKNHWN 232
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.343133188IPR017930Myb domain
SuperFamilySSF466896.11E-31136231IPR009057Homeodomain-like
SMARTSM007172.7E-17137186IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.7E-28139190IPR009057Homeodomain-like
PfamPF139215.2E-21141201No hitNo description
CDDcd001671.35E-15141184No hitNo description
SMARTSM007171.1E-18189237IPR001005SANT/Myb domain
PROSITE profilePS5129422.476189239IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.9E-22191237IPR009057Homeodomain-like
CDDcd001673.49E-14192235No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MESGGGGGGG GCTSFRYGNL QHKPHIYRPS PPLTAIDRFL WGQSNFSQQQ TQNNVKNSGR  60
VVLPTSGAIG AAYCSEFLWA NNQEASFVDG LFADGETLNW SHGRNQNVSS NEEIKVAAKS  120
CKGVGKRAKK GSSAALIKGQ WTDEEDRKLI KLVKQYGVRK WAQIAEKLSG RAGKQCRERW  180
HNHLRPDIKK DSWSEEEERL LVEAHAKVGN RWAEIAKHIP GRTENSIKNH WNATKRRQNS  240
RRKNKQTEKQ KGKPQSSVLQ DYIRSKNLIN SNSITTTTSP TCSTLSEDPP TQFNYFLPEL  300
SESTTDDSPP LIAETYDEEL VFMQNFFASY HNQPSINEHD GTKNLSRTAA YHHGNPKNCD  360
QHLTDVIEQS SSLSSSTPSQ NVCTNGLQAQ ETPTTHLYSD LYLSYLLNGT AISSSSSIQC  420
GYSNIDMDTQ MGDQAYSSGK KEMDLIEMVS SSQFSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-451362382104C-Myb DNA-Binding Domain
1msf_C3e-451362382104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023873311.11e-167transcription factor MYB119-like
TrEMBLA0A2N9I0S31e-175A0A2N9I0S3_FAGSY; Uncharacterized protein
STRINGcassava4.1_033771m1e-160(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42652656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11050.11e-63myb domain protein 64