PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_1518_f_5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | YABBY | ||||||||
Protein Properties | Length: 208aa MW: 23447.2 Da PI: 6.644 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 146.1 | 3.5e-45 | 4 | 159 | 22 | 169 |
YABBY 22 lavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvp 113 l vsvP +sl++vvtvrCGhCtsllsvn++kas +lla+ s+ +e+ kee+ +e+ +++++ + + ++s +++ + +s n+ + Neem_1518_f_5 4 LKVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASfvplHLLASLSR-NEDPKEEVCKEEVHTDQKANRLSPSVPTSSDNEEEHAVSVNHIVNK---- 94 78****************************999778788888887.6777777777766666666666655555555555555555544333.... PP YABBY 114 pvirPPekrqrvPsaynrfik.........eeiqrikasnPdishreafsaaaknWahfPkihfg 169 p Pekrqr+Psayn fik eei+r+k++nP+++hreafs+aaknWahfP+i ++ Neem_1518_f_5 95 PFLTAPEKRQRAPSAYNHFIKnshvdthdrEEIRRLKTENPNMAHREAFSTAAKNWAHFPPIQYK 159 35677***************87777777778******************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.7E-45 | 4 | 158 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MYSLKVSVPC SSLSMVVTVR CGHCTSLLSV NMMKASFVPL HLLASLSRNE DPKEEVCKEE 60 VHTDQKANRL SPSVPTSSDN EEEHAVSVNH IVNKPFLTAP EKRQRAPSAY NHFIKNSHVD 120 THDREEIRRL KTENPNMAHR EAFSTAAKNW AHFPPIQYKG GGESCGQEEE NPTWNSEEEE 180 ATEVHVEGNG FCERKAPRHS LRAKTPFE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006483897.1 | 2e-92 | axial regulator YABBY 4 | ||||
Swissprot | Q9LDT3 | 1e-54 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | A0A1R3I6W4 | 6e-83 | A0A1R3I6W4_COCAP; YABBY protein | ||||
STRING | XP_006483897.1 | 6e-92 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8044 | 27 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 9e-55 | YABBY family protein |
Publications ? help Back to Top | |||
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