PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_1512_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

HD-ZIP

Protein Properties

Length: 1300aa MW: 147586 Da PI: 7.1986

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_1512_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	53.9	3.1e-17	54	119	1	56
TT--SS--HHHHHHHHHH..........HHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeel..........FeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++k +++t++q++eLe++ F+++++p++++r eL+k+lgL+ +q+k+WFqNrR+++k Neem_1512_f_1 54 KKKYHRHTPHQIQELEAYgllisfsfnfFKECPHPDEKQRSELSKRLGLESKQIKFWFQNRRTQMK 119 78999*********865555555444889******************************999 PP
2	START	160.4	1.4e-50	271	536	2	206
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 la++a++el+k+a+a++p+W ks + +n++e++++f++ + + +ea+r+++vv+ ++ l e+l+d + +W e+++ +a+t++ Neem_1512_f_1 271 LALTAMDELIKMAQADAPLWIKSLdgerDVLNREEYMRTFTPCIGmkpngFATEASRETAVVIINSSALIETLMDAN-RWAEMFPcmiaRAATIDM 365 6899******************999999*******998899**************************.************** PP ECTT................................EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EE CS START 85 issg................................galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRael 147 issg +m+ae+q+lsplvp R + f+R+++q+ +g+w++vdvS+d +++ + ++ +++ Neem_1512_f_1 366 ISSGvtgtkngalqvvffsticaftasnwykvmmqtDHTLQMFAEFQVLSPLVPvRQVKFLRFCKQHAEGVWAVVDVSIDTNREGLNANAFASCRR 461 *******************************877889****************************************999**** PP SSEEEEEEEECTCE................EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 148 lpSgiliepksngh................skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 lpSg++i++++n++ kvtwve+ +++++ +h+l r+l+ sg+ +ga++w atlqrqce+ Neem_1512_f_1 462 LPSGCVIQDMPNNYcktyflhltcdidslcIKVTWVERSEYDESAVHNLCRPLLTSGIGFGAQRWIATLQRQCEC 536 ***********************99559***************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.4E-20	40	123	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.09E-16	41	121	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.398	51	121	IPR001356	Homeobox domain
SMART	SM00389	9.0E-14	53	125	IPR001356	Homeobox domain
CDD	cd00086	3.27E-16	54	122	No hit	No description
Pfam	PF00046	1.2E-14	54	119	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	96	119	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	37.517	261	539	IPR002913	START domain
SuperFamily	SSF55961	1.35E-25	262	371	No hit	No description
CDD	cd08875	3.39E-108	265	535	No hit	No description
SMART	SM00234	2.6E-23	270	536	IPR002913	START domain
Pfam	PF01852	9.2E-42	271	536	IPR002913	START domain
SuperFamily	SSF55961	1.35E-25	405	536	No hit	No description
SuperFamily	SSF55961	2.88E-9	555	676	No hit	No description
Pfam	PF11955	7.3E-111	824	1160	IPR021099	Plant organelle RNA recognition domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1300 aa Download sequence Send to blast
MDAHGDMGLL GEHFDPSIVG RIREDGYESR SGSDNVEGAS GDDLETNDDG PPRKKKYHRH 60 TPHQIQELEA YGLLISFSFN FFKECPHPDE KQRSELSKRL GLESKQIKFW FQNRRTQMKT 120 QMERHENVIL RQEHDKLRAE NDMLKEAMKN PICNNCGGPA VPGNVSNYEL QQLRIENARY 180 KDELGRICIL ANKFLGRPLT SSANTMAPQC LDSSLELAVG RNGFGSITNI SGSMMPGIEF 240 VEGPVMSLMK PPITGMMGNE MPYERNMLID LALTAMDELI KMAQADAPLW IKSLDGERDV 300 LNREEYMRTF TPCIGMKPNG FATEASRETA VVIINSSALI ETLMDANRWA EMFPCMIARA 360 ATIDMISSGV TGTKNGALQV VFFSTICAFT ASNWYKVMMQ TDHTLQMFAE FQVLSPLVPV 420 RQVKFLRFCK QHAEGVWAVV DVSIDTNREG LNANAFASCR RLPSGCVIQD MPNNYCKTYF 480 LHLTCDIDSL CIKVTWVERS EYDESAVHNL CRPLLTSGIG FGAQRWIATL QRQCECLAVL 540 VSSTLPGQDH SGINPMGRKS MLKLAQRMTY NFCSGICASS VRKWDKLCVG NVGEDVRVLT 600 RKNINDPGEP PGVVLCAATS VWIPVTRQRV FDFMRNEQMR SEWDILSNGG PMQEMVHIAK 660 GQEHDNCVSL LRAGAMNAND SEGCRVKNEP QVENFWWTVG LINRGYVSSS SSGSGIDSVD 720 QRAAQLAESI LVTFSFSLKM LSVFLFGESA SSNQVKTAAL SISSAINGTI PRATRTSCLF 780 KLTDILPKPG SLDIDVFRNQ RGVFGLAKHI SQKCTSIPKR QQRVRDHAFD NYMEIGKKMR 840 KVVKFQSLIL SQHNQTLPIS RLDFLSRRIG FKRLEAGKFL LKFPHVFEIY EHPVQRILYC 900 RPTRKALQQI EQENQALNAQ IPEAVTRLRK LLMMSNSGRL RLEHVRIARS EFGLPEDFEY 960 SVILKNPQFF RLFDAEETRN KYIELVERDS RLAVCAIENV REKEYRERGI DAEDIRFSFI 1020 VNFPPGFKIG KYYRIAVWKW QRVPYWSPYE DVSGYDLRSL EAQKRMEKRA VATIHELLSL 1080 TVEKKITMER IAHFRLAMNL PKKLKEFLLQ HQGIFYISTR GNHGKLHTVF LRETYRKGEL 1140 IEPNDLYLAR RKLGELVLLS PRTAKMDGDL VSYRWDRDDH DMGRDRRRVY SENVFENFGV 1200 EDNVGGDGKG DDNLDSDLGS DVESDITGED TDSDEIVDTE EDALAVSIVL GRNSPCRKAS 1260 TGMRFKELLC ISLFFNFEEE LTTMEDLCMP AWCPLCTPVI

Sequence ? help Back to Top

Protein Sequence Length: 1300 aa Download sequence Send to blast

MDAHGDMGLL GEHFDPSIVG RIREDGYESR SGSDNVEGAS GDDLETNDDG PPRKKKYHRH  60
TPHQIQELEA YGLLISFSFN FFKECPHPDE KQRSELSKRL GLESKQIKFW FQNRRTQMKT  120
QMERHENVIL RQEHDKLRAE NDMLKEAMKN PICNNCGGPA VPGNVSNYEL QQLRIENARY  180
KDELGRICIL ANKFLGRPLT SSANTMAPQC LDSSLELAVG RNGFGSITNI SGSMMPGIEF  240
VEGPVMSLMK PPITGMMGNE MPYERNMLID LALTAMDELI KMAQADAPLW IKSLDGERDV  300
LNREEYMRTF TPCIGMKPNG FATEASRETA VVIINSSALI ETLMDANRWA EMFPCMIARA  360
ATIDMISSGV TGTKNGALQV VFFSTICAFT ASNWYKVMMQ TDHTLQMFAE FQVLSPLVPV  420
RQVKFLRFCK QHAEGVWAVV DVSIDTNREG LNANAFASCR RLPSGCVIQD MPNNYCKTYF  480
LHLTCDIDSL CIKVTWVERS EYDESAVHNL CRPLLTSGIG FGAQRWIATL QRQCECLAVL  540
VSSTLPGQDH SGINPMGRKS MLKLAQRMTY NFCSGICASS VRKWDKLCVG NVGEDVRVLT  600
RKNINDPGEP PGVVLCAATS VWIPVTRQRV FDFMRNEQMR SEWDILSNGG PMQEMVHIAK  660
GQEHDNCVSL LRAGAMNAND SEGCRVKNEP QVENFWWTVG LINRGYVSSS SSGSGIDSVD  720
QRAAQLAESI LVTFSFSLKM LSVFLFGESA SSNQVKTAAL SISSAINGTI PRATRTSCLF  780
KLTDILPKPG SLDIDVFRNQ RGVFGLAKHI SQKCTSIPKR QQRVRDHAFD NYMEIGKKMR  840
KVVKFQSLIL SQHNQTLPIS RLDFLSRRIG FKRLEAGKFL LKFPHVFEIY EHPVQRILYC  900
RPTRKALQQI EQENQALNAQ IPEAVTRLRK LLMMSNSGRL RLEHVRIARS EFGLPEDFEY  960
SVILKNPQFF RLFDAEETRN KYIELVERDS RLAVCAIENV REKEYRERGI DAEDIRFSFI  1020
VNFPPGFKIG KYYRIAVWKW QRVPYWSPYE DVSGYDLRSL EAQKRMEKRA VATIHELLSL  1080
TVEKKITMER IAHFRLAMNL PKKLKEFLLQ HQGIFYISTR GNHGKLHTVF LRETYRKGEL  1140
IEPNDLYLAR RKLGELVLLS PRTAKMDGDL VSYRWDRDDH DMGRDRRRVY SENVFENFGV  1200
EDNVGGDGKG DDNLDSDLGS DVESDITGED TDSDEIVDTE EDALAVSIVL GRNSPCRKAS  1260
TGMRFKELLC ISLFFNFEEE LTTMEDLCMP AWCPLCTPVI

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006490345.1	0.0	homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A067EY32	0.0	A0A067EY32_CITSI; Uncharacterized protein
STRING	XP_006490345.1	0.0	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]