PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_14978_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | C3H | ||||||||
Protein Properties | Length: 290aa MW: 31813.6 Da PI: 7.2707 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.7 | 2e-08 | 105 | 126 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +++C+ + G C yG++C+F+H Neem_14978_f_1 105 EKICKSYVT-GSCTYGSKCRFIH 126 578999999.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.521 | 102 | 129 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.41E-6 | 102 | 127 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-4 | 102 | 128 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-7 | 105 | 127 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.2E-6 | 105 | 126 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MAKRRSGSGS LSPLMRKYLT SNSNSNSSSN SSSPLSRMSS NCNSPLSAVD EEYVFVMDGI 60 LVSNDDFCRS SEEFGNSRFG TKSQLAYGKD ELRSTRPIGK NKSEEKICKS YVTGSCTYGS 120 KCRFIHQDQI MTDSALVLNT AKMDSEGSVN TSKNSNTFKP ELNGEDNWSP EDDGIEVTLP 180 TKPPGTNSPA SREEANESIE NVLYGPTAAK KRLPVFTESL LAPTAPLQGK KLMNLLKMFY 240 TVFILSITNT IVHWCGLELE ITFCFSVETP SYSHRYGRFK DSNQGGLGSG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006493280.1 | 8e-46 | mRNA decay activator protein ZFP36-like isoform X1 | ||||
TrEMBL | A0A2H5QGT9 | 7e-43 | A0A2H5QGT9_CITUN; Uncharacterized protein | ||||
STRING | XP_006493280.1 | 3e-45 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15770 | 8 | 15 |