PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_1481_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

MYB_related

Protein Properties

Length: 388aa MW: 43309.5 Da PI: 4.7193

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_1481_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35.8	1.9e-11	21	56	1	38
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 +g WT+eEd++l+ +++++G W+tI++ g Rt++ Neem_1481_f_1 21 KGLWTPEEDQKLISYIQKHGIQKWSTIPKLAG--RTGN 56 678****************************8..9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.23E-10	14	57	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-13	15	56	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.342	16	67	IPR017930	Myb domain
SMART	SM00717	8.9E-4	20	68	IPR001005	SANT/Myb domain
Pfam	PF00249	9.0E-9	21	56	IPR001005	SANT/Myb domain
CDD	cd00167	1.26E-7	24	56	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MEETKKERMK KTGILETKLR KGLWTPEEDQ KLISYIQKHG IQKWSTIPKL AGRTGNNGIE 60 NFRRFGERKG LQGNRKDIKS IKVNESATPS FQESEYTTPN SDVEGSQSSS FHPNNYQVPL 120 QTTNTASLNS AQSSPFMDAL SDDIKFDGNT LELLADDFLN WWSCDDFAPA VQSQLFHPSF 180 SSTRPDTLGN IPKRRNEMQG EPSTNRFGEW KEFDSHLPVQ GEMQASKDES SHLSNSLHDV 240 TSRSCEQEVA CADLRSFQPP HAHPNVQNDI FAQLSNSERG HSLRSESGDA FDKFLLDSWI 300 STSCVANETN FNCIEGANGA IPYFQETEET TTYSNIEGSQ SSSFHPNIYR VPSQTINTAS 360 LTSAETSVCG DAESGALVDF MSEFLILL

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MEETKKERMK KTGILETKLR KGLWTPEEDQ KLISYIQKHG IQKWSTIPKL AGRTGNNGIE  60
NFRRFGERKG LQGNRKDIKS IKVNESATPS FQESEYTTPN SDVEGSQSSS FHPNNYQVPL  120
QTTNTASLNS AQSSPFMDAL SDDIKFDGNT LELLADDFLN WWSCDDFAPA VQSQLFHPSF  180
SSTRPDTLGN IPKRRNEMQG EPSTNRFGEW KEFDSHLPVQ GEMQASKDES SHLSNSLHDV  240
TSRSCEQEVA CADLRSFQPP HAHPNVQNDI FAQLSNSERG HSLRSESGDA FDKFLLDSWI  300
STSCVANETN FNCIEGANGA IPYFQETEET TTYSNIEGSQ SSSFHPNIYR VPSQTINTAS  360
LTSAETSVCG DAESGALVDF MSEFLILL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006428204.1	4e-24	calmodulin-binding transcription activator 3
Refseq	XP_015382833.2	4e-24	LOW QUALITY PROTEIN: calmodulin-binding transcription activator 3
TrEMBL	A0A067ERP0	3e-41	A0A067ERP0_CITSI; Uncharacterized protein
STRING	XP_006428204.1	1e-23	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G57560.1	1e-11	myb domain protein 50