PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_14749_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 172aa    MW: 19629.4 Da    PI: 9.8951
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_14749_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM90.43.2e-28151376128
             NAM   6 rFhPtdeelvveyLkkkvegkklel.eevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlskkg 97 
                      F+P deel+ +yL+ k++g+++ + ++ ik++d+yk+eP++L   +++ ++ ++yfFs+ dkky++g++ nr +   g+Wk +    +++++kg
  Neem_14749_f_1  15 VFKPDDEELMFHYLTGKMSGRTVGEgFRYIKDIDVYKYEPSRLSsLAHNFGQGKMYFFSPLDKKYQKGTNVNRqVRGGGFWKVS----DIKTTKG 105
                     5*********************6552677**************944555577799******************555699**965....5667789 PP

             NAM  98 elvglkktLvfykg.rapkgektdWvmheyrl 128
                     + +  k+ L+++++ +a+ ++kt+W+m+ey l
  Neem_14749_f_1 106 KPIARKTLLAYHEKdQASAPVKTQWLMKEYML 137
                     99**********664888899*********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-298142IPR003441NAC domain
PROSITE profilePS5100527.35610160IPR003441NAC domain
PfamPF023655.5E-1416136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MTSSSKSNTF PSCDVFKPDD EELMFHYLTG KMSGRTVGEG FRYIKDIDVY KYEPSRLSSL  60
AHNFGQGKMY FFSPLDKKYQ KGTNVNRQVR GGGFWKVSDI KTTKGKPIAR KTLLAYHEKD  120
QASAPVKTQW LMKEYMLLDQ NDKMDLQENQ VALRGEVFPR TSMRTDLGGA TA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-19913916144NO APICAL MERISTEM PROTEIN
1ut4_B5e-19913916144NO APICAL MERISTEM PROTEIN
1ut7_A5e-19913916144NO APICAL MERISTEM PROTEIN
1ut7_B5e-19913916144NO APICAL MERISTEM PROTEIN
3swm_A6e-19913919147NAC domain-containing protein 19
3swm_B6e-19913919147NAC domain-containing protein 19
3swm_C6e-19913919147NAC domain-containing protein 19
3swm_D6e-19913919147NAC domain-containing protein 19
3swp_A6e-19913919147NAC domain-containing protein 19
3swp_B6e-19913919147NAC domain-containing protein 19
3swp_C6e-19913919147NAC domain-containing protein 19
3swp_D6e-19913919147NAC domain-containing protein 19
4dul_A5e-19913916144NAC domain-containing protein 19
4dul_B5e-19913916144NAC domain-containing protein 19
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1852528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.15e-23NAC family protein