PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_14574_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MYB | ||||||||
Protein Properties | Length: 393aa MW: 43558.8 Da PI: 8.6856 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.6 | 1.1e-16 | 125 | 170 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+q+G+ +W++Ia+ + gR++k+c++rw++ Neem_14574_f_1 125 RGHWRPAEDAKLKELVAQYGPQNWNLIAENLE-GRSGKSCRLRWFNQ 170 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 57.4 | 3.3e-18 | 177 | 220 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ Neem_14574_f_1 177 RRAFTEEEEERLLAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 220 678*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.784 | 120 | 171 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-14 | 124 | 173 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.58E-28 | 125 | 218 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.2E-16 | 125 | 170 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-26 | 126 | 178 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.41E-13 | 128 | 169 | No hit | No description |
PROSITE profile | PS51294 | 27.671 | 172 | 226 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-15 | 176 | 224 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 177 | 219 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.0E-21 | 179 | 225 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.51E-7 | 188 | 219 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MSLQHLKNDA NVFNGVHQEI NFLAPPPSRL SLSNNFGAMG GHPKIRKINN PEMGFQILDS 60 SMEKAMEPWV GLKPVENRGA KRTVDEREGI FGVDKKGLCL NLGEEVEEVK RSGTGRNGHT 120 KLCARGHWRP AEDAKLKELV AQYGPQNWNL IAENLEGRSG KSCRLRWFNQ LDPRINRRAF 180 TEEEEERLLA AHRLYGNKWA MIARLFPGRT DNAVKNHWHV IMARKHREQS SIYRRRKPSA 240 VAQVVPRGLD MNFQNNACSE STISSNNESA STITDLSLTP SSAKVTPGYF TKLSLMGCSS 300 GKKEITTGNG DIDKIYDTGN EFYQAGSIGV VMGVDQSGNS SDSNSEVSAT ESVANNTTTT 360 NNNKTNLSTY GENENSYEKI NMPFIDFLGV GAS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-33 | 125 | 225 | 7 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017976032.1 | 1e-179 | PREDICTED: transcription factor MYB29-like | ||||
Swissprot | Q5NBM8 | 1e-76 | CSA_ORYSJ; Transcription factor CSA | ||||
TrEMBL | V4U3P0 | 1e-177 | V4U3P0_9ROSI; Uncharacterized protein | ||||
STRING | XP_006479198.1 | 1e-178 | (Citrus sinensis) | ||||
STRING | XP_006443531.1 | 1e-178 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1210 | 28 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 2e-69 | myb domain protein 105 |