PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_14564_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

ARR-B

Protein Properties

Length: 273aa MW: 31146.8 Da PI: 8.716

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_14564_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	45.8	1.3e-14	194	238	1	54
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 +pr+ W+ eLH++Fv+a A+Pk+ilelm+v+gL +e+v SHL k+R Neem_14564_f_1 194 RPRVLWSVELHQQFVSA---------AVPKRILELMNVPGLKRENVGSHLAKFR 238 59***********98.........9************************9 PP
2	Response_reg	49.3	2.8e-17	24	98	1	75
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEE CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpii 75 vl+vdD+ + +++l+++l++ y +v++++++ al+ll++k+ +D++l D+ mp+ dG++ll++i e +lp+i Neem_14564_f_1 24 VLVVDDDTSCLRILKRILRRFLY-NVTTCSQAAVALNLLRKKNgcFDVVLSDVHMPDADGYKLLEHIGLEM-DLPVI 98 89*******************.****************************************95433.56665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.2300	1.1E-20	22	98	No hit	No description
SuperFamily	SSF52172	2.56E-23	22	132	IPR011006	CheY-like superfamily
SMART	SM00448	2.6E-9	22	120	IPR001789	Signal transduction response regulator, receiver domain
PROSITE profile	PS50110	19.877	23	141	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	2.1E-13	24	98	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	9.63E-18	25	124	No hit	No description
Gene3D	G3DSA:3.40.50.2300	2.5E-4	104	144	No hit	No description
SuperFamily	SSF46689	4.84E-9	191	243	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.0E-14	192	244	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.0E-9	195	238	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MAHFQRMVPS SASVPEQFPV GSRVLVVDDD TSCLRILKRI LRRFLYNVTT CSQAAVALNL 60 LRKKNGCFDV VLSDVHMPDA DGYKLLEHIG LEMDLPVIRN PPRCDYLIKP MHEEELKNIW 120 QHVIQKKWNG NEKAKHSGSF EDNDRQSKII DEVEYASFAN EGTEGVLKAQ KNRICAKEED 180 DGELENEDPS TKRRPRVLWS VELHQQFVSA AVPKRILELM NVPGLKRENV GSHLAKFRPY 240 LKRLNGVQGG ISNAFRALIE TNMKLGSLRK FDI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250\|UniProtKB:Q940D0}.
UniProt	Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250\|UniProtKB:Q940D0}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006448148.1	1e-132	two-component response regulator ORR21 isoform X2
Swissprot	A2XE31	3e-86	ORR21_ORYSI; Two-component response regulator ORR21
Swissprot	Q8H7S7	2e-86	ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBL	V4U620	1e-131	V4U620_9ROSI; Two-component response regulator
STRING	XP_006448147.1	1e-132	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8150	27	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16857.1	3e-71	response regulator 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]