PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_1439_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MYB_related | ||||||||
Protein Properties | Length: 239aa MW: 26731.8 Da PI: 4.3396 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.1 | 1.1e-14 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+ +++++G +W+ ++ g+ R++k+c++rw +yl Neem_1439_f_2 14 KGSWTPEEDRKLIAYIRRYGIWNWTEMPKAAGLLRCGKSCRLRWVNYL 61 799*****************99**********99************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-22 | 7 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.361 | 9 | 65 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.8E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.49E-22 | 15 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.83E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS50090 | 4.286 | 62 | 86 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-9 | 65 | 88 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.8 | 66 | 184 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MVRAVGCENT SVRKGSWTPE EDRKLIAYIR RYGIWNWTEM PKAAGLLRCG KSCRLRWVNY 60 LKPGIKRGNF SEEEDEIIMK LHELLGNRIV PSNIVEHDKI NPPEPDFLLP NNNSPIASNI 120 DGCNSSTPTS PQLSTCTDNF SSSSSSSCGS AGEIFENLTL EYQNSGSSET YGELQSFWEQ 180 PFMMEDLCMM DGYGTTHTDP GFMVSTSLWG HENGIFPSSA SCYEAEDDLL AYSFDAWIS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-18 | 14 | 121 | 7 | 109 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006449185.2 | 1e-68 | myb-related protein 308 | ||||
TrEMBL | A0A2H5N269 | 2e-64 | A0A2H5N269_CITUN; Uncharacterized protein | ||||
STRING | XP_006467925.1 | 5e-65 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 6e-37 | myb domain protein 4 |