PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_14209_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family AP2
Protein Properties Length: 703aa    MW: 75971.7 Da    PI: 6.3036
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_14209_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.78e-15368419155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Neem_14209_f_1 368 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 419
                     57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.087270333IPR001471AP2/ERF domain
SMARTSM003809.1E-6287339IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-9296335IPR016177DNA-binding domain
CDDcd000185.47E-11297335No hitNo description
Gene3DG3DSA:3.30.730.102.3E-8297334IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-17368429IPR016177DNA-binding domain
CDDcd000186.05E-25368429No hitNo description
PfamPF008471.0E-9368419IPR001471AP2/ERF domain
PROSITE profilePS5103219.045369427IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-18369428IPR001471AP2/ERF domain
SMARTSM003801.5E-33369433IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MNNWLGFSLS PQEQLPSSQT DHHHHQDHSQ NSVSHRLGFN SDELSGTVIS GDCFDLTSAD  60
STPPSFGILE AFHRNHNHSQ EWNMKGLGMN SENNYKNSSE LSMLVATPCN SQEPKLENFL  120
GGRSFSDHEQ KLHGCTTVYD TTATTTTVTA GAGDYMFIPT NCSLQLPSDD TTNNARVENS  180
TSSSNNNSSS IGLSMIKTWL RNQPAPATAP AQLESKNANG GGAQSLSLSM STGSQSGSPL  240
PLLNANGGMN GGESSSDNNK QQKTTTAATT TMGTTGVDSQ TGAIEAVPRK SIDTFGQRTS  300
IYRGGYDKEE KAARAYDLAA LKYWGTTTTT NFPISNYEKE LEEMKHMTRQ EYVASLRRKS  360
SGFSRGASIY RGVTRHHQHG RWQARIGRVA GNKDLYLGTF STQEEAAEAY DIAAIKFRGL  420
NAVTNFDMSR YDVNSILESS TLPIGGAAKR LKDVEQASEM TVDGQRLAVA AAADDDNISS  480
QTPADGINIY GSAAAHHHGW PAIAAFQQAQ HQTYSSMHFP YGQRIWCKQE QEDFHNQLQL  540
GNNNTHNFFQ PSVLHNLMNM ESSSLEHSPS SNNSVIYSNG SYHQAGHGSN NGGFVIPMGT  600
VIAANNDQGF GESSGDQAQA AAAKALGFEN MFSSASNSSS SSSDPYHARN LYYLSQQQES  660
SSNHPQGPAC NNWVPTAVPT LAQKSSNVAV CHGAPTFTVW NDT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024038292.10.0AP2-like ethylene-responsive transcription factor BBM1
TrEMBLV4SXL40.0V4SXL4_9ROSI; Uncharacterized protein
STRINGXP_006480499.10.0(Citrus sinensis)
STRINGXP_006428686.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86552737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.15e-93AP2 family protein