PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_14162_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family Dof
Protein Properties Length: 226aa    MW: 24373.9 Da    PI: 8.6697
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_14162_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.39.6e-401776362
          zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                     ++lkcprCds+ntkfCyynny+lsqPr+fCk+CrryWtkGGalrn+PvGgg+rkn++++
  Neem_14162_f_2 17 MEQLKCPRCDSSNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGTRKNNTKK 76
                    5789****************************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-291175IPR003851Zinc finger, Dof-type
PfamPF027012.3E-331974IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.4692074IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102258IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MQDPKAFQPM KPHFPEMEQL KCPRCDSSNT KFCYYNNYNL SQPRHFCKNC RRYWTKGGAL  60
RNIPVGGGTR KNNTKKRQKP DPDPPRNNHP ARKGQECSRP GIAAGSATTS QEAVGGTDTD  120
PRRLYGLGVD PDHKMLDITG SFSSLLASNG GIGSVLDGMN SNGSGLKMVQ MGSFGENFGS  180
GPNLESFPDG GSGSENQGNN GDSSCWSGGN NGWPDLAIYT PSSNFQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00199DAPTransfer from AT1G51700Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4760368e-43AM476036.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X057671.24, clone ENTAV 115.
GenBankFQ3830288e-43FQ383028.1 Vitis vinifera clone SS0ABG34YI09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006426477.11e-119dof zinc finger protein DOF3.1
SwissprotO821556e-45DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBLA0A067EU651e-118A0A067EU65_CITSI; Uncharacterized protein
TrEMBLA0A2H5NEV01e-118A0A2H5NEV0_CITUN; Uncharacterized protein
TrEMBLV4SGK21e-118V4SGK2_9ROSI; Uncharacterized protein
STRINGXP_006426477.11e-118(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12692896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.18e-47DOF zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]