PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_1414_f_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | C3H | ||||||||
Protein Properties | Length: 296aa MW: 31297.3 Da PI: 9.5557 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.7 | 1.7e-07 | 36 | 60 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k ++C f+ t C++Gd+C+F H Neem_1414_f_3 36 KSKPCTKFYSTSGCPFGDSCHFLHH 60 7789********************6 PP | |||||||
2 | zf-CCCH | 23.2 | 1.2e-07 | 101 | 126 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C+ f Ck+Gd+C+FaHg+ Neem_1414_f_3 101 KTRMCNKFNSAEGCKFGDKCHFAHGE 126 899*******99************96 PP | |||||||
3 | zf-CCCH | 37 | 5.9e-12 | 263 | 287 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC +fa+ G C +GdrC+FaHg Neem_1414_f_3 263 FKTKLCENFAK-GSCTFGDRCHFAHG 287 69*********.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.159 | 34 | 62 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.01 | 34 | 61 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.27E-6 | 35 | 61 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.5E-6 | 36 | 60 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.4E-9 | 36 | 60 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.4E-8 | 98 | 130 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.404 | 99 | 127 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.018 | 99 | 126 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-13 | 100 | 130 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-4 | 101 | 126 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 7.16E-15 | 164 | 240 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 7.0E-13 | 169 | 239 | IPR004087 | K Homology domain |
Gene3D | G3DSA:3.30.1370.10 | 4.9E-16 | 169 | 238 | IPR004088 | K Homology domain, type 1 |
PROSITE profile | PS50084 | 14.739 | 170 | 234 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 1.4E-12 | 172 | 236 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 3.43E-14 | 174 | 234 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 9.5E-16 | 258 | 293 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-8 | 261 | 293 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.596 | 262 | 289 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.7E-8 | 262 | 288 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-9 | 263 | 287 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MDTRKRTMSE AGANANGSVK KFKHETDSLS TGVGSKSKPC TKFYSTSGCP FGDSCHFLHH 60 VPGGYNTVAQ MMNLPPAVPA SSRNMATAPP SSNGSSMQTV KTRMCNKFNS AEGCKFGDKC 120 HFAHGEWELG KPFAPSHDDP HPHAMGGVPS RMGSRYEPTV PGAAASFGAS ATAKISVDAS 180 LAGAIIGKGG VNSKQICRQT GAKLSIRDHE TDPSLKNIEL EGSFEQIKQA SAMVRELIVR 240 IGPGHAKGHG TPGGPAPHER NNFKTKLCEN FAKGSCTFGD RCHFAHGAAE LRKTVV |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00113 | ampDAP | Transfer from AT3G12130 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006429867.1 | 1e-160 | zinc finger CCCH domain-containing protein 14 | ||||
Refseq | XP_006429870.1 | 1e-160 | zinc finger CCCH domain-containing protein 14 | ||||
Swissprot | Q7F8R0 | 1e-110 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A067FU61 | 1e-159 | A0A067FU61_CITSI; Uncharacterized protein | ||||
TrEMBL | V4SVR3 | 1e-159 | V4SVR3_9ROSI; Uncharacterized protein | ||||
STRING | XP_006429867.1 | 1e-159 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2336 | 28 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 2e-58 | C3H family protein |