PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_14100_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family HSF
Protein Properties Length: 311aa    MW: 34493.3 Da    PI: 4.735
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_14100_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.11.6e-34251192102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX...XX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk...el 93 
                     Fl+k+y++++d+++++lisw+e+g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k    l
  Neem_14100_f_1  25 FLTKTYQLVDDPSVDDLISWNEDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDCFRRGEKgekGL 110
                     9*****************************************************************99.........********8776644489 PP

                     XXXXXXXXX CS
    HSF_DNA-bind  94 lekikrkks 102
                     l++i+r+k 
  Neem_14100_f_1 111 LRDIQRRKI 119
                     9*****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.0E-3717105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.3E-5621117IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.59E-3322117IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.7E-3025117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-212548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-216375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-217688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MAPVESTSES PTTGGDSQRS LPTPFLTKTY QLVDDPSVDD LISWNEDGST FIVWRPAEFA  60
RDLLPKYFKH NNFSSFVRQL NTYGFRKVVP DRWEFANDCF RRGEKGEKGL LRDIQRRKIS  120
PSAAAAATAA TVTVAAVARA VSPANSGEEQ VISANSSPGA APAATIIRTT SCTTMPELLE  180
ENDRLRKENV QLNHELSQLK GLCNNIFALM TNYASGQLDT VNLWEGKTLE FLPARKAEEG  240
GGKLEEVEEL DLTPRLFGVS IGAKRARRED EEEQNQRQQN EPESGSDVKS EPLDGNVNDH  300
HQETPWLELG K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-252512220125Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440567.10.0heat stress transcription factor B-2b
SwissprotQ9T0D31e-107HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLV4TK860.0V4TK86_9ROSI; Uncharacterized protein
STRINGXP_006440567.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.14e-97HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]