PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_14065_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 111aa MW: 12757.1 Da PI: 10.9008 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 101 | 4.4e-32 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELS+LCdaeva+iifs++gklye++s Neem_14065_f_1 9 KRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.347 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.2E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.04E-38 | 2 | 61 | No hit | No description |
SuperFamily | SSF55455 | 2.49E-30 | 2 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-33 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.2E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-33 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-33 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 111 aa Download sequence Send to blast |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSILCD AEVALIIFSN RGKLYEFCST 60 SRLLIKDGSL FGKSSVSVVF CTRSVLLIHA LFHSEILKES HRLRMNFLIN V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 6e-20 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6byy_B | 6e-20 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6byy_C | 6e-20 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6byy_D | 6e-20 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6bz1_A | 6e-20 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6bz1_B | 6e-20 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6bz1_C | 6e-20 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6bz1_D | 6e-20 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MADS-box transcription factor that acts redundantly with J2 to control meristem maturation and inflorescence architecture. {ECO:0000269|PubMed:28528644}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ394059 | 4e-57 | GQ394059.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS1024 SSR marker CGR6437 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021285782.1 | 6e-38 | MADS-box protein CMB1-like | ||||
Swissprot | Q7Y040 | 5e-38 | EJ2_SOLLC; MADS-box protein EJ2 | ||||
TrEMBL | S8D4L4 | 2e-36 | S8D4L4_9LAMI; Uncharacterized protein | ||||
STRING | POPTR_0004s11450.1 | 4e-37 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM78 | 28 | 413 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24260.3 | 2e-39 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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