PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_13999_f_3

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C3H

Protein Properties

Length: 2017aa MW: 220232 Da PI: 8.6931

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_13999_f_3	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.1	2.3e-06	1846	1867	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C++f +tG C+ G++Ck +H++ Neem_13999_f_3 1846 CPTFEATGSCSLGSKCKLHHPK 1867 *****************99985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.357	1727	1756	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.011	1728	1755	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.709	1818	1839	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.3	1818	1844	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.206	1840	1868	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.8	1845	1867	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0043484	Biological Process	regulation of RNA splicing
GO:0060149	Biological Process	negative regulation of posttranscriptional gene silencing
GO:0016607	Cellular Component	nuclear speck
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 2017 aa Download sequence Send to blast
MRRSKRSAAR RKQEELSRHA GATQSYGSSV HSSVQFHERS SDFVHRIPIH DDRQHQHQQQ 60 QHRQRLLADF DARPGRWDPP RNVPDHRPLV GSLEHRHQLD HRPISPYRSV NSKIKHELDA 120 SSYRFRERHK NDGFEFEYKT SSSSNQRAEF VPHRSHFVPD SDRLNSSNYD SQHSSQFDSN 180 SLVRNNVRNG VFDRAAMRER ESLIERGSNS ENISDGVRGF IGKREFYGLD SGRYGNNRGS 240 RENSYEYNRT PWKQVQKKSA LLRIQKPSYR NRDEEELHYS GYEMKSGSFR GKEQVLFSDR 300 EVGEEEEREM SPVELDVMAS SKDRSRSQMN KPSDSGVKLD SGRVVVNNIA SSDNRDLKQS 360 EKEVAPSGVN MGDIKSQPCS TGNSNLLTKI SVEMSKDIVP DKSGTGVGAG KTSPVKVAKK 420 KRVVKKVVKK AMNPILPVSS SQPIKKLGES RKEEGSTLNA PAAPVQKMGV KPSKEKITSA 480 MPFGHLVDFR PYPNGKNILA GNGKVSGSPE AAVVLKEVST DNDSRVSSVP KIKRKRTGSI 540 SPLASSSRKE TKIDEDAVNA DNGSDALHSV SNSDKNPIKS LNENTGSDIS TVEGAGQQCR 600 HNSSSSLLDY SATKEFPEIL FSARRNINSD LLSLEENRKL GSLVNTSSTS HGMNTTVAFD 660 NDSVGSQEKI TNSEVGIINA SNKQPCKDLM GTTVNSSTAE GFPSGEVSAL SSLEEIGVGN 720 ASIYADCSNH GKCSVTASEN VNIINTKEIN IGTGDYNGKQ LAPNDVTISF ENVVTEGFPN 780 TLFSVGSSEE DMLNTTNKSK VMTSLSDLPD ATITDMSMEP VKAVGPAQSV DTTLKLSTKV 840 FSPAEVRVTS SLDVGLQCCS DGSGVFNGGN LAGGCCEAKV SDSSVYIGIS PERRKRRKFS 900 ACHPGLSSTA ASESSEGPVT PDLPTAGVEL PSISTDGQIQ IKEGVAVSNM DTLGDSNLPP 960 CPDGITFLCE NSLAQVSSEV AVSVSRDVSR VADDGLKVEH PSATSSSAFG EVEISNAPSC 1020 CPPGSESTQR VNENPVIDGS NSNEVMRMDD SKTERMEAVV AKEQGKACSE AAQFETPESQ 1080 SADSSQVLPT YVESDGCLLE KGDLPSVSTY PALAADADGV STTNSNDEMM EFDSPSNMCS 1140 PEILSNVAAM QMLNHESSSQ IPNENACEID KIPTEKPVLE ANSNLSAHTS PSEHAKINLK 1200 SDCIVESGRL VVRRTMLLPS HDVKNTGHSL ALTSEETYGK KNQPSHTVSR INPSCSSSVF 1260 SASRNTTSST CIRKPRTWHR TESSSASPVP GNKSSLCTVP QQSQLPKNVA KFQSTSYIRK 1320 GNSLVRKPAP VAALPQVAHG LTSSVYRLNS LGISESKKTT GSDSTVDVIH PPNFLRMGGG 1380 NAPLERPRTP PLPVVTKVPN RTTNLAVDCT TSPLAEPLPN GCSETTSDPQ KSMEINSELS 1440 ASSAHLKISE TPAKQTGLAN STEIQGEPND GTLGTANEKR ITYVKQKSNQ LIAASGDCAL 1500 SVQDPDKTQV LTSEGYYKRR KNQLIRTSLE SHINPTVTSV DGAMTSEGEK ASNDIFSRSF 1560 SKKRSFKVGK KIRKPLKFSL VWTLNGLQSS KGSDHSSYHQ KEATLAVAAV EKKRQQNGVE 1620 SFASKTKNRS HSAKSRIFRI GSVRYKMDSS RRTLQRISDD GSSCTAAPNL EKNAKKSYIP 1680 RRLVIGNDEY VRIGNGNQLI RDPKKRARVL ASEKVRWSLH TARLRLAKRR KYCQFFTRFG 1740 KCNKDDGKCP YMHDPSKIAV CTKSFQNECQ IVPISCKVFY HAISWVLFDK LNIQRILTSL 1800 LSGLCTNKNC PYRHVHVNPN ASTCEGFLKG YCADGNECRK KHSYVCPTFE ATGSCSLGSK 1860 CKLHHPKSRS KGKKSRGSRK QKSTYGRYFG SMLVDDSEPQ MTRMSESHST QDNIDLFIEG 1920 KLVDYISLDF SNEEAREAND ALCGQTTFPD NDASDLQSDD LDELIKPIRI MNCHFCVDEQ 1980 ILQDKGIISS FSGGAPRIIQ VTGRKPAFVG KRSVQIV

Sequence ? help Back to Top

Protein Sequence Length: 2017 aa Download sequence Send to blast

MRRSKRSAAR RKQEELSRHA GATQSYGSSV HSSVQFHERS SDFVHRIPIH DDRQHQHQQQ  60
QHRQRLLADF DARPGRWDPP RNVPDHRPLV GSLEHRHQLD HRPISPYRSV NSKIKHELDA  120
SSYRFRERHK NDGFEFEYKT SSSSNQRAEF VPHRSHFVPD SDRLNSSNYD SQHSSQFDSN  180
SLVRNNVRNG VFDRAAMRER ESLIERGSNS ENISDGVRGF IGKREFYGLD SGRYGNNRGS  240
RENSYEYNRT PWKQVQKKSA LLRIQKPSYR NRDEEELHYS GYEMKSGSFR GKEQVLFSDR  300
EVGEEEEREM SPVELDVMAS SKDRSRSQMN KPSDSGVKLD SGRVVVNNIA SSDNRDLKQS  360
EKEVAPSGVN MGDIKSQPCS TGNSNLLTKI SVEMSKDIVP DKSGTGVGAG KTSPVKVAKK  420
KRVVKKVVKK AMNPILPVSS SQPIKKLGES RKEEGSTLNA PAAPVQKMGV KPSKEKITSA  480
MPFGHLVDFR PYPNGKNILA GNGKVSGSPE AAVVLKEVST DNDSRVSSVP KIKRKRTGSI  540
SPLASSSRKE TKIDEDAVNA DNGSDALHSV SNSDKNPIKS LNENTGSDIS TVEGAGQQCR  600
HNSSSSLLDY SATKEFPEIL FSARRNINSD LLSLEENRKL GSLVNTSSTS HGMNTTVAFD  660
NDSVGSQEKI TNSEVGIINA SNKQPCKDLM GTTVNSSTAE GFPSGEVSAL SSLEEIGVGN  720
ASIYADCSNH GKCSVTASEN VNIINTKEIN IGTGDYNGKQ LAPNDVTISF ENVVTEGFPN  780
TLFSVGSSEE DMLNTTNKSK VMTSLSDLPD ATITDMSMEP VKAVGPAQSV DTTLKLSTKV  840
FSPAEVRVTS SLDVGLQCCS DGSGVFNGGN LAGGCCEAKV SDSSVYIGIS PERRKRRKFS  900
ACHPGLSSTA ASESSEGPVT PDLPTAGVEL PSISTDGQIQ IKEGVAVSNM DTLGDSNLPP  960
CPDGITFLCE NSLAQVSSEV AVSVSRDVSR VADDGLKVEH PSATSSSAFG EVEISNAPSC  1020
CPPGSESTQR VNENPVIDGS NSNEVMRMDD SKTERMEAVV AKEQGKACSE AAQFETPESQ  1080
SADSSQVLPT YVESDGCLLE KGDLPSVSTY PALAADADGV STTNSNDEMM EFDSPSNMCS  1140
PEILSNVAAM QMLNHESSSQ IPNENACEID KIPTEKPVLE ANSNLSAHTS PSEHAKINLK  1200
SDCIVESGRL VVRRTMLLPS HDVKNTGHSL ALTSEETYGK KNQPSHTVSR INPSCSSSVF  1260
SASRNTTSST CIRKPRTWHR TESSSASPVP GNKSSLCTVP QQSQLPKNVA KFQSTSYIRK  1320
GNSLVRKPAP VAALPQVAHG LTSSVYRLNS LGISESKKTT GSDSTVDVIH PPNFLRMGGG  1380
NAPLERPRTP PLPVVTKVPN RTTNLAVDCT TSPLAEPLPN GCSETTSDPQ KSMEINSELS  1440
ASSAHLKISE TPAKQTGLAN STEIQGEPND GTLGTANEKR ITYVKQKSNQ LIAASGDCAL  1500
SVQDPDKTQV LTSEGYYKRR KNQLIRTSLE SHINPTVTSV DGAMTSEGEK ASNDIFSRSF  1560
SKKRSFKVGK KIRKPLKFSL VWTLNGLQSS KGSDHSSYHQ KEATLAVAAV EKKRQQNGVE  1620
SFASKTKNRS HSAKSRIFRI GSVRYKMDSS RRTLQRISDD GSSCTAAPNL EKNAKKSYIP  1680
RRLVIGNDEY VRIGNGNQLI RDPKKRARVL ASEKVRWSLH TARLRLAKRR KYCQFFTRFG  1740
KCNKDDGKCP YMHDPSKIAV CTKSFQNECQ IVPISCKVFY HAISWVLFDK LNIQRILTSL  1800
LSGLCTNKNC PYRHVHVNPN ASTCEGFLKG YCADGNECRK KHSYVCPTFE ATGSCSLGSK  1860
CKLHHPKSRS KGKKSRGSRK QKSTYGRYFG SMLVDDSEPQ MTRMSESHST QDNIDLFIEG  1920
KLVDYISLDF SNEEAREAND ALCGQTTFPD NDASDLQSDD LDELIKPIRI MNCHFCVDEQ  1980
ILQDKGIISS FSGGAPRIIQ VTGRKPAFVG KRSVQIV

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM484113	3e-76	AM484113.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X030754.11, clone ENTAV 115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006472862.1	0.0	uncharacterized protein At1g21580
TrEMBL	A0A2H5PIB3	0.0	A0A2H5PIB3_CITUN; Uncharacterized protein
STRING	XP_006472862.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5780	10	12