PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_1389_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bZIP
Protein Properties Length: 395aa    MW: 41986.5 Da    PI: 6.6858
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_1389_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1751e-23296358163
                    XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                    e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+ kv++L++eN+ L++el++l++e++kl se+
  Neem_1389_f_3 296 ERELKRQKRKQSNRESARRSRLRKQAECEELQAKVESLTNENRNLRDELQRLSEECEKLSSEN 358
                    89**********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.1E-3241134IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165967.6E-8162265No hitNo description
Gene3DG3DSA:1.20.5.1702.1E-20290356No hitNo description
PfamPF001703.6E-21296358IPR004827Basic-leucine zipper domain
SMARTSM003381.8E-21296360IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.587298361IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.03E-12299355No hitNo description
CDDcd147026.17E-24301351No hitNo description
PROSITE patternPS000360303318IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010629Biological Processnegative regulation of gene expression
GO:0090342Biological Processregulation of cell aging
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MVRLRRSCPT ELEQNKILLR IHQKSDHKVV KLIGLSSFIL MGTGEESTPP KTSKPAASTQ  60
EVQTAPSYPD WSSSMQAFYG AGATPPPFFA STVASPTPHP YLWGSQHPLM PPYGTPVPYP  120
AIYPPGGVYA HPSIATTPTT APTNTDLEGK STEGKDKASA KKSKATSGGK AGEIGKATSG  180
SGNDGVSQSA ESGSEGSSDA SDENANQQDF TGSKKGSFDQ MLADANAQNN TAEAVPASVP  240
GKPVVSMPAT NLNIGMDLWN ASSAAAGAAK MRPNPSGAPS AVVPPGMMPE QWIQDERELK  300
RQKRKQSNRE SARRSRLRKQ AECEELQAKV ESLTNENRNL RDELQRLSEE CEKLSSENSS  360
IKEELSRICG AEAVANLEQS NATSALQSRA DEGNS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1312318RRSRLRK
2312319RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00039PBMTransfer from AT4G36730Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006425722.10.0G-box-binding factor 1 isoform X1
RefseqXP_006425724.10.0G-box-binding factor 1 isoform X1
RefseqXP_006425726.10.0G-box-binding factor 1 isoform X1
RefseqXP_006466752.10.0G-box-binding factor 1 isoform X1
RefseqXP_006466753.10.0G-box-binding factor 1 isoform X1
RefseqXP_006466754.10.0G-box-binding factor 1 isoform X1
SwissprotP427741e-127GBF1_ARATH; G-box-binding factor 1
TrEMBLV4SPD20.0V4SPD2_9ROSI; Uncharacterized protein
STRINGXP_006466752.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72742643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.11e-114G-box binding factor 1
Publications ? help Back to Top
  1. Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S
    Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development.
    Mol Plant, 2013. 6(6): p. 1758-68
    [PMID:24157607]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Karumuri S,Bandopadhyay R
    In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana.
    Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9
    [PMID:25630103]
  4. Smykowski A,Zimmermann P,Zentgraf U
    CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 1164-7
    [PMID:26826725]
  5. Smykowski A,Fischer SM,Zentgraf U
    Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1.
    Plants (Basel), 2015. 4(3): p. 691-709
    [PMID:27135347]
  6. Giri MK, et al.
    GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana.
    Plant J., 2017. 91(5): p. 802-815
    [PMID:28622438]