PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_13879_f_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family Nin-like
Protein Properties Length: 302aa    MW: 34717.2 Da    PI: 5.5345
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_13879_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK80.71.5e-25149199252
          RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                     +k++s +++s+yF+++i++AAkeL+v++T+LK++CR++GI+RWP+Rk+ sl
  Neem_13879_f_2 149 SKTLSRKTISQYFYMTITKAAKELNVGVTLLKKRCRELGIRRWPQRKLMSL 199
                     689*********************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.097131221IPR003035RWP-RK domain
PfamPF020427.2E-21152199IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051302Biological Processregulation of cell division
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MGSLQACNKF ELLPKEEDPF SFLTQFPSLD FGENGFSSMD NWQNEMSLQE SCFDAIPLME  60
SFPDPLYTSI HDSQDNIVPF PKVTTSQGND EKYGSGIWNE LGPLFEPEKH SPQTLMCKNI  120
ADAFKETREL DINAIGRRRK SEEKTNNSSK TLSRKTISQY FYMTITKAAK ELNVGVTLLK  180
KRCRELGIRR WPQRKLMSLQ NLIRNVQELE RGGDIPGSEG KLKEAIEILE RERELIEEIP  240
DLEMEDKTKR LRQACFKANY KKRKLSEMMN NDHDHDQQLL SSTATSSCYS SGDHGYGEMK  300
SM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024042709.12e-95protein RKD1-like
TrEMBLB9RLY31e-81B9RLY3_RICCO; Transcription factor, putative
STRINGXP_002514752.12e-82(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39662356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.12e-43RWP-RK domain-containing protein