PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_13114_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 336aa MW: 37014.2 Da PI: 6.5166 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.1 | 1.3e-17 | 158 | 212 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k Neem_13114_f_1 158 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 212 778899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 128.3 | 3.2e-41 | 158 | 248 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk Neem_13114_f_1 158 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELR-ALK 248 69*************************************************************************************9.555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 4.1E-5 | 26 | 113 | IPR006712 | HD-ZIP protein, N-terminal |
Gene3D | G3DSA:1.10.10.60 | 3.8E-17 | 141 | 215 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.61E-18 | 151 | 215 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.811 | 154 | 214 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.7E-15 | 156 | 218 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.97E-16 | 158 | 215 | No hit | No description |
Pfam | PF00046 | 4.3E-15 | 158 | 212 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 189 | 212 | IPR017970 | Homeobox, conserved site |
CDD | cd14686 | 0.00543 | 207 | 246 | No hit | No description |
SMART | SM00340 | 9.1E-26 | 214 | 257 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 5.0E-11 | 214 | 248 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MELGLSLGDT PKPFGFMEKS HEVSSNKGLG FCMGLSIGQS VAEELDLLPN TPVPRNQLAS 60 FLPFPWTSDN GSSEAGSSGQ MVRGFDVNKF PLAEEPEDGA ALSSSPNNSA ASSFQMDFCI 120 YSSGGNKKDI ESGGMGNEIE AERASSRVSD EDENGCTRKK LRLSKEQSAF LEESFKEHNT 180 LNPKQKLALA KQLNLRPRQV EVWFQNRRAR TKLKQTEVDC EYLKRCCETL TEENRRLHKE 240 LQELRALKTS NPFYMQLPAT TLTMCPSCER VATTTNSNAC GSGAATTTTN ISDPTSTTTG 300 FSLSRPRFFP FSQNQNQQTT SSSSRDQIGK HVEKSS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 156 | 162 | TRKKLRL |
2 | 206 | 214 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011041997.1 | 1e-139 | PREDICTED: homeobox-leucine zipper protein HOX11-like | ||||
Swissprot | P46665 | 7e-95 | HAT14_ARATH; Homeobox-leucine zipper protein HAT14 | ||||
TrEMBL | B9HPS0 | 1e-138 | B9HPS0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s02850.1 | 1e-138 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4928 | 28 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 5e-78 | homeobox from Arabidopsis thaliana |