PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_13072_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bZIP

Protein Properties

Length: 332aa MW: 37435.4 Da PI: 7.5704

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_13072_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	25.8	2.3e-08	246	266	5	25
CHHHCHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKk 25 +r++r++kNRe+A rsR+RK+ Neem_13072_f_1 246 RRQKRMIKNRESAARSRARKQ 266 79******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.3E-14	236	266	No hit	No description
CDD	cd14707	2.71E-16	246	324	No hit	No description
SuperFamily	SSF57959	4.31E-5	246	271	No hit	No description
PROSITE pattern	PS00036	0	249	264	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.3E-14	303	325	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009737	Biological Process	response to abscisic acid
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MGSQGDGSSN GKQSQFQPLV RQNSMYSLTL DEVQNQLGDL GKPLSSMNLD ELLKNVWTAE 60 ANQSTGMEME GTTLANQTSL QHQASLSLTS ALSKKTVDEV WRDIQQSKTN GEKKSRDRQP 120 TLGEMTLEDF LVKAGVVAEA SLDRKTDGPV VGVDQNLAMQ FPQQGQWMQY PHPQYQHSQQ 180 SMMGVYMPGQ PIPQPMHMGT VAVMDVSYPE SQVALTSPSM GTLSDTQTLG RKRGTPEEMI 240 ERTVERRQKR MIKNRESAAR SRARKQVGFE SFSFLKSTVM LCFAFIFTPN LVFSFSSNLF 300 EQAYTNELEN KVSRLEEENE RLRKRKVWIC IL

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00409	DAP	Transfer from AT3G56850	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006432530.2	1e-177	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Refseq	XP_006471287.1	1e-177	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Refseq	XP_024039912.1	1e-177	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	2e-77	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	V4T326	1e-177	V4T326_9ROSI; Uncharacterized protein
STRING	XP_006432530.1	1e-178	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1884	28	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	9e-59	ABA-responsive element binding protein 3

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]