PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_13053_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

HSF

Protein Properties

Length: 394aa MW: 45211.8 Da PI: 7.6658

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_13053_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	86.1	4.7e-27	1	132	9	101
HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT............................. CS HSF_DNA-bind 9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks............................. 74 +++d+ +++++sws n+nsfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+Y+ + + + +k + Neem_13053_f_1 1 MVDDSGTDNIVSWSPNKNSFVVWNPPEFARILLPTYFKHNNFSSFIRQLNTYERGSENFQIEKG-Eislklssdllcmsivllnlccvalrnsfh 94 899***********************************************755444443332.2367889**************99999 PP ...........XTTSEEEEESXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 75 ...........kekiweFkhksFkkgkkellekikrkk 101 +++ weF+++ F k+kk+ll++i+r+k Neem_13053_f_1 95 mlcssqgfrkiDPERWEFSNEDFIKDKKHLLKNIHRRK 132 9988877765449*********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00447	3.0E-24	1	131	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SMART	SM00415	4.3E-32	1	131	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	1.6E-29	1	52	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	7.75E-19	1	53	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	1.6E-29	92	131	IPR011991	Winged helix-turn-helix DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MVDDSGTDNI VSWSPNKNSF VVWNPPEFAR ILLPTYFKHN NFSSFIRQLN TYERGSENFQ 60 IEKGEISLKL SSDLLCMSIV LLNLCCVALR NSFHMLCSSQ GFRKIDPERW EFSNEDFIKD 120 KKHLLKNIHR RKPIHSHSNP QGSSVDPERA AFEEEIERLS REKAALEANI LRFKQQRSAA 180 KLHLEELTQR VDSMDQRQDK LLSFIQKAMQ NPTFVEHIAR RIESMDISAY NKKRRKPQVD 240 QSKTAVETSL LDKNSCSRPE FGNIFHQDFS NKLRLELSPA VSDVNLVSHS TQSSNEDGGS 300 PQKKTSEADP KDVHTRTEGN LYVPETFELS DTGASFTFNM DSSFSRKVPA NDKPRVHPLQ 360 QRLTSTEEVD GHSVKGFTHL ECPNQVMTWP KIQN

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MVDDSGTDNI VSWSPNKNSF VVWNPPEFAR ILLPTYFKHN NFSSFIRQLN TYERGSENFQ  60
IEKGEISLKL SSDLLCMSIV LLNLCCVALR NSFHMLCSSQ GFRKIDPERW EFSNEDFIKD  120
KKHLLKNIHR RKPIHSHSNP QGSSVDPERA AFEEEIERLS REKAALEANI LRFKQQRSAA  180
KLHLEELTQR VDSMDQRQDK LLSFIQKAMQ NPTFVEHIAR RIESMDISAY NKKRRKPQVD  240
QSKTAVETSL LDKNSCSRPE FGNIFHQDFS NKLRLELSPA VSDVNLVSHS TQSSNEDGGS  300
PQKKTSEADP KDVHTRTEGN LYVPETFELS DTGASFTFNM DSSFSRKVPA NDKPRVHPLQ  360
QRLTSTEEVD GHSVKGFTHL ECPNQVMTWP KIQN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	231	235	KKRRK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006492535.1	0.0	heat stress transcription factor A-5
Swissprot	Q94BZ5	1e-129	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	A0A2H5PML6	0.0	A0A2H5PML6_CITUN; Uncharacterized protein
TrEMBL	A0A2H5PMM0	0.0	A0A2H5PMM0_CITUN; Uncharacterized protein
STRING	XP_006492535.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10134	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-132	HSF family protein

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]